bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Emax_1113_orf1 Length=123 Score E Sequences producing significant alignments: (Bits) Value Hs5803165 65.1 3e-11 7303165 61.6 4e-10 At5g60460 55.8 2e-08 CE27617 55.8 2e-08 YER087c-a 54.3 5e-08 At2g45070 52.4 2e-07 At3g60540 52.4 2e-07 SPBC2G2.03c 42.0 3e-04 YER019c-a 39.3 0.002 CE03080 29.3 2.0 YOR112w 27.3 6.8 > Hs5803165 Length=96 Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 8/94 (8%) Query 25 TMVGTNSLSTQASQTTVGGSRVAAT--RKRVTSKSSTASSGAATISRPRSNAANQGILKF 82 T GTN S+ S + +R A + R+R + T S+G T +A G+ +F Sbjct 5 TPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTT------SAGTGGMWRF 58 Query 83 YTEDAPGLRVGPQAVLIMALVFMGVVVMLHIVGK 116 YTED+PGL+VGP VL+M+L+F+ V MLHI GK Sbjct 59 YTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGK 92 > 7303165 Length=100 Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 17/103 (16%) Query 32 LSTQASQTTVG-GSRVAATRKRVTSKSSTASSGAATISRPR-------------SNAANQ 77 + AS T+VG GSR + ++++ S S G +T+ + + A Sbjct 1 MPAPASSTSVGSGSR---SPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTG 57 Query 78 GILKFYTEDAPGLRVGPQAVLIMALVFMGVVVMLHIVGKIRQA 120 G+ +FYT+D+PG++VGP VL+M+L+F+ V MLHI GK ++ Sbjct 58 GMWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100 > At5g60460 Length=109 Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 22/39 (56%), Positives = 31/39 (79%), Gaps = 0/39 (0%) Query 79 ILKFYTEDAPGLRVGPQAVLIMALVFMGVVVMLHIVGKI 117 +L+FYT+DAPGL++ P VLIM+L F+G V LH+ GK+ Sbjct 62 MLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGKL 100 > CE27617 Length=81 Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 32/41 (78%), Gaps = 0/41 (0%) Query 76 NQGILKFYTEDAPGLRVGPQAVLIMALVFMGVVVMLHIVGK 116 N G+ +FYTED+ GL++GP VL+M+LVF+ V +LHI GK Sbjct 35 NGGLWRFYTEDSTGLKIGPVPVLVMSLVFIASVFVLHIWGK 75 > YER087c-a Length=82 Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 8/83 (9%) Query 36 ASQTTVGGSRVAATRKRVTSKSSTASSGAATISRPRSNA-ANQGILKFYTEDAPGLRVGP 94 +S T GG R RK+ +S+ AS+ P+ N +N ILK Y+++A GLRV P Sbjct 2 SSPTPPGGQRTLQKRKQGSSQKVAASA-------PKKNTNSNNSILKIYSDEATGLRVDP 54 Query 95 QAVLIMALVFMGVVVMLHIVGKI 117 VL +A+ F+ VV LH++ K+ Sbjct 55 LVVLFLAVGFIFSVVALHVISKV 77 > At2g45070 Length=82 Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 32/39 (82%), Gaps = 0/39 (0%) Query 79 ILKFYTEDAPGLRVGPQAVLIMALVFMGVVVMLHIVGKI 117 +L+FYT+DAPGL++ P VLIM++ F+ V +LH++GK+ Sbjct 40 MLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKL 78 > At3g60540 Length=81 Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 32/39 (82%), Gaps = 0/39 (0%) Query 79 ILKFYTEDAPGLRVGPQAVLIMALVFMGVVVMLHIVGKI 117 +L+FYT+DAPGL++ P VLIM++ F+ V +LH++GK+ Sbjct 37 MLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKL 75 > SPBC2G2.03c Length=102 Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 0/39 (0%) Query 79 ILKFYTEDAPGLRVGPQAVLIMALVFMGVVVMLHIVGKI 117 +LK YT++A G +V P V+++++ F+ V +LHIV +I Sbjct 57 LLKLYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVARI 95 > YER019c-a Length=88 Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query 42 GGSRVAATRKRVTS-KSSTASSGAATISRPRSNAANQGILKFYTEDAPGLRVGPQAVLIM 100 GG R+ R++ S K A + + ++ ILK YT++A G RV VL + Sbjct 8 GGQRILQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLFL 67 Query 101 ALVFMGVVVMLHIVGK 116 ++ F+ V+ LH++ K Sbjct 68 SVGFIFSVIALHLLTK 83 > CE03080 Length=1851 Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 11/67 (16%) Query 19 SFTLLFTMVGTNSLSTQAS----------QTTVGGSRVAATRKRVTSKSSTASSGAATIS 68 + T L + +G SLS AS TTV S V ATR + S+SST SS + S Sbjct 1718 TLTALQSALGNASLSLPASPPPNTETTKVNTTVIPSDVLATRMTM-SQSSTKSSNVSVSS 1776 Query 69 RPRSNAA 75 R R N + Sbjct 1777 RHRDNQS 1783 > YOR112w Length=761 Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query 21 TLLFTMVGTNSLSTQASQTTVGGSRVAATRKRVTSKSSTASSGAAT--ISRPRSNAANQG 78 TL ++ ++ LS + +TT+ R A+ VT+KSS ++ A + IS R + +G Sbjct 684 TLAKSIAPSSRLSIKKKKTTILAPRNIASNSTVTTKSSLSNKTARSKPISSIRGSVTKKG 743 Lambda K H 0.324 0.131 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1191192512 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40