bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_1308_orf1
Length=116
Score E
Sequences producing significant alignments: (Bits) Value
Hs8923930 41.6 4e-04
At5g51720 40.4 9e-04
Hs22044166 39.7 0.001
CE03767_1 37.0 0.010
7301766 36.6 0.013
Hs17435381 30.8 0.62
7301946 28.9 2.2
CE02915 27.7 6.0
7302300 27.3 7.1
> Hs8923930
Length=108
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query 10 CRCWQSTKFPICDNSH-KVLQKQGCNCGPAMLEIRQ 44
CRCW+S KFP CD +H K ++ G N GP +++ ++
Sbjct 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 107
> At5g51720
Length=108
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query 10 CRCWQSTKFPICDNSH-KVLQKQGCNCGPAMLE 41
CRCW+S FP+CD SH K + G N GP +L+
Sbjct 74 CRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLK 106
> Hs22044166
Length=547
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query 10 CRCWQSTKFPICDNSH-KVLQKQGCNCGPAMLEIRQA 45
C CW+ KFP CD SH K ++ G N GP ++E ++
Sbjct 511 CHCWRYKKFPFCDGSHTKHNEQTGDNVGPLIIEKKET 547
> CE03767_1
Length=148
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query 10 CRCWQSTKFPICDNSHKVLQKQ-GCNCGPAMLE 41
CRCW+S K+P CD SH K+ G N GP +++
Sbjct 98 CRCWKSEKWPYCDGSHGKHNKETGDNVGPLIVK 130
> 7301766
Length=133
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query 10 CRCWQSTKFPICDNSHKVLQKQ-GCNCGPAMLE 41
CRCW++ +P CD SH KQ G N GP +++
Sbjct 100 CRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIK 132
> Hs17435381
Length=141
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query 10 CRCWQSTKFPICDN-SHKV 27
C CW+S KFP+CD SHK
Sbjct 99 CHCWRSRKFPLCDGVSHKT 117
> 7301946
Length=704
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query 24 SHKVLQKQGCNCGPAMLEIRQAPSVEEPRAFKSTAGTSKDNP 65
S KV + +GC PAM A + + P AF GT+ DNP
Sbjct 370 SRKVDKIRGCQ--PAMGYSFAAGTTDGPGAFSFEQGTTTDNP 409
> CE02915
Length=331
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 0/33 (0%)
Query 22 DNSHKVLQKQGCNCGPAMLEIRQAPSVEEPRAF 54
DN + V++K GC +E+ Q S +EP +
Sbjct 19 DNKNDVIEKVGCGLHSTNVELAQTRSAQEPADY 51
> 7302300
Length=134
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 0/25 (0%)
Query 2 KRTQNFSVCRCWQSTKFPICDNSHK 26
+++ ++ +C C Q+T P CD +HK
Sbjct 101 EKSGDYWLCNCKQTTHRPFCDGTHK 125
Lambda K H
0.324 0.132 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1174970866
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40