bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Emax_1345_orf1 Length=143 Score E Sequences producing significant alignments: (Bits) Value At3g18790 85.1 4e-17 Hs20149304 79.7 2e-15 CE05922 69.3 2e-12 7298990 62.0 3e-10 YJR050w 48.5 4e-06 SPBC32F12.05c 46.6 1e-05 7292847 28.1 6.1 > At3g18790 Length=300 Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 44/97 (45%), Positives = 66/97 (68%), Gaps = 3/97 (3%) Query 34 MARNAERANAVLNKWLAVKNAVIKGAKKNIQLGPCIPEECDDLDRATQWRQQLIREIGRG 93 MARN E+A ++LN+++ K + K K+ P + EC DL A +WRQQ++REIG Sbjct 1 MARNEEKAQSMLNRFITQKESEKKKPKER---RPYLASECRDLAEADKWRQQILREIGSK 57 Query 94 ISLIQDSSLGDHRIRDLNDQINKKIKQKKRWEFRIKE 130 ++ IQ+ LG+HR+RDLND+INK ++++ WE RI E Sbjct 58 VAEIQNEGLGEHRLRDLNDEINKLLRERYHWERRIVE 94 > Hs20149304 Length=285 Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/97 (43%), Positives = 65/97 (67%), Gaps = 4/97 (4%) Query 34 MARNAERANAVLNKWLAVKNAVIKGAKKNIQLGPCIPEECDDLDRATQWRQQLIREIGRG 93 MARNAE+A L ++ + A ++ K + P + EC +L +A +WR+Q+I EI + Sbjct 1 MARNAEKAMTALARF---RQAQLEEGKVK-ERRPFLASECTELPKAEKWRRQIIGEISKK 56 Query 94 ISLIQDSSLGDHRIRDLNDQINKKIKQKKRWEFRIKE 130 ++ IQ++ LG+ RIRDLND+INK +++K WE RIKE Sbjct 57 VAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKE 93 > CE05922 Length=267 Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 3/97 (3%) Query 34 MARNAERANAVLNKWLAVKNAVIKGAKKNIQLGPCIPEECDDLDRATQWRQQLIREIGRG 93 MARNAE+A L +W +K +G I P ++C +L A ++R++++R+ + Sbjct 1 MARNAEKAMTALARWRRMKEEEERGP---IARRPHDVKDCRNLSDAERFRREIVRDASKK 57 Query 94 ISLIQDSSLGDHRIRDLNDQINKKIKQKKRWEFRIKE 130 I+ IQ+ LG+ ++RDLND++N+ IK K WE RI+E Sbjct 58 ITAIQNPGLGEFKLRDLNDEVNRLIKLKHAWEQRIRE 94 > 7298990 Length=274 Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%) Query 45 LNKWLAVKNAVIKGAKKNIQLGPCIPEECDDLDRATQWRQQLIREIGRGISLIQDSS--- 101 L +W A K V G K+ P + EC DL R ++R ++IR+I + ++ IQ+ + Sbjct 10 LARWRAAKE-VESGEKERR---PYLASECHDLPRCEKFRLEIIRDISKKVAQIQNGTYFA 65 Query 102 -LGDHRIRDLNDQINKKIKQKKRWEFRI 128 LG+ RIRDLND+INK +++K+ WE +I Sbjct 66 GLGEFRIRDLNDEINKLLREKRHWENQI 93 > YJR050w Length=235 Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query 34 MARNAERANAVLNKWLAVKNAVIKGAKKNIQLG-PCIPEECDDLDRATQWRQQLIREIGR 92 M+RN ++AN+VL ++ + G K + P + + A +W++Q+ +EI + Sbjct 1 MSRNVDKANSVLVRFQEQQAESAGGYKDYSRYQRPRNVSKVKSIKEANEWKRQVSKEIKQ 60 Query 93 GISLIQDSSLGDHRIRDLNDQINKKIKQKKRWEFRI 128 + I D SL + +I +LND++N K+ KRW++ I Sbjct 61 KSTRIYDPSLNEMQIAELNDELNNLFKEWKRWQWHI 96 > SPBC32F12.05c Length=217 Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 36/48 (75%), Gaps = 0/48 (0%) Query 83 RQQLIREIGRGISLIQDSSLGDHRIRDLNDQINKKIKQKKRWEFRIKE 130 R ++++I R IS IQ ++L +++IRDLND IN+ +++K WE +I++ Sbjct 33 RASVVKDISRKISRIQSATLPEYQIRDLNDAINRLMREKHEWEVQIRD 80 > 7292847 Length=1547 Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query 6 TSTTAATATTTTTAAAAAAAAAAATAAKMARNAERANAVLNKWLAVKNAVIKGAKKNIQL 65 +S T + +T +A AA A ++ +L K +K V ++L Sbjct 929 SSATDPSGSTAMSATVVAALNAVKNRKSQLSTQDKIQDLLQKKQELKGTVTPVGVNGVKL 988 Query 66 GPCIPEECDDLDRATQWRQQLIREIGR 92 P + D ++RA +++L+R+I R Sbjct 989 NYGPPPK-DAIERACTMKEELLRKIER 1014 Lambda K H 0.318 0.128 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1639544670 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40