bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_1460_orf1
Length=60
Score E
Sequences producing significant alignments: (Bits) Value
At2g01690 38.1 0.004
7299645 33.9 0.082
SPBC25H2.03 30.4 0.74
Hs22069041 27.7 5.3
Hs21359945 27.3 7.5
> At2g01690
Length=760
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query 15 ETVQKAVSALTADFLSSPIANIRKGGLLGVAA--VGLAFEVRSY 56
+ + K + L +F SP AN RKGGL+G+AA VGL+ E Y
Sbjct 45 DKISKVIEMLIKEFAKSPQANHRKGGLIGLAAVTVGLSTEAAQY 88
> 7299645
Length=687
Score = 33.9 bits (76), Expect = 0.082, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 0/35 (0%)
Query 17 VQKAVSALTADFLSSPIANIRKGGLLGVAAVGLAF 51
++K + L D+ +S AN RKG L+G+AA+GL
Sbjct 47 IRKLIEVLATDYATSRDANRRKGALIGLAAMGLGL 81
> SPBC25H2.03
Length=811
Score = 30.4 bits (67), Expect = 0.74, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query 15 ETVQKAVSALTADFLSSPI--ANIRKGGLLGVAAVGLAF 51
E ++ +S L DF+ SP N GGL+G+AAV +A
Sbjct 38 EKIRAVISQLANDFVYSPARGPNATFGGLIGLAAVAIAL 76
> Hs22069041
Length=368
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query 12 ATQETVQ--KAVSALTADFLSSPIANIRKGGLLGVAAVGLAF 51
A TVQ + L+ +F S + RKGGL+G+AA +A
Sbjct 42 AQNNTVQIKHVIQTLSQEFALSQHPHSRKGGLIGLAACSIAL 83
> Hs21359945
Length=1015
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 0/47 (0%)
Query 1 LQQHEQQHQQQATQETVQKAVSALTADFLSSPIANIRKGGLLGVAAV 47
+ ++Q ++ + K V L +DFL S ++ +R G G+A +
Sbjct 672 INSDDEQESKEVEETATAKNVLKLLSDFLDSEVSELRTGAAEGLAKL 718
Lambda K H
0.314 0.126 0.328
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1181901402
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40