bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_1682_orf1
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
Hs4506229 47.4 7e-06
CE00101 45.4 3e-05
7298530 44.7 4e-05
YER021w 42.4 2e-04
At1g75990 40.4 7e-04
At1g20200 38.5 0.003
ECU05g1540 30.0 1.1
Hs20541815 28.9 2.7
At2g19560 28.5 3.0
> Hs4506229
Length=534
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 0/46 (0%)
Query 8 VRSGDLHAFAAVLQQHELRFKLDDTFTLLRRLHQNVIRAGLRIISL 53
VR+G+L F VL Q +F+ D T+TL+ RL NVI+ G+R+ISL
Sbjct 367 VRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISL 412
> CE00101
Length=504
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 0/53 (0%)
Query 1 YREIVLPVRSGDLHAFAAVLQQHELRFKLDDTFTLLRRLHQNVIRAGLRIISL 53
Y ++ VR GD+ F L+Q + +F+ DDT TL+ RL QNVI+ ++ ISL
Sbjct 328 YLDLSRGVRDGDVARFNHNLEQFKTQFEADDTLTLIVRLRQNVIKTAIKQISL 380
> 7298530
Length=494
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 0/53 (0%)
Query 1 YREIVLPVRSGDLHAFAAVLQQHELRFKLDDTFTLLRRLHQNVIRAGLRIISL 53
Y ++ VR G+L F V+ Q+ +F+LD TFTL+ RL NVI+ +R I L
Sbjct 321 YFQLTQAVRLGNLKRFGDVVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRSIGL 373
> YER021w
Length=523
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 0/53 (0%)
Query 1 YREIVLPVRSGDLHAFAAVLQQHELRFKLDDTFTLLRRLHQNVIRAGLRIISL 53
Y + V+ GDL F + + +++ DDT+ L RL NVI+ G+RIISL
Sbjct 345 YYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISL 397
> At1g75990
Length=487
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 0/53 (0%)
Query 1 YREIVLPVRSGDLHAFAAVLQQHELRFKLDDTFTLLRRLHQNVIRAGLRIISL 53
Y E+ VR GDL F + ++ F D T L+ RL NVIR GLR IS+
Sbjct 312 YFELTNAVRIGDLELFGKIQEKFAKTFAEDRTHNLIVRLRHNVIRTGLRNISI 364
> At1g20200
Length=488
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 0/53 (0%)
Query 1 YREIVLPVRSGDLHAFAAVLQQHELRFKLDDTFTLLRRLHQNVIRAGLRIISL 53
Y E+ VR GDL F V ++ F D T L+ RL NVIR GLR IS+
Sbjct 313 YFELTNAVRIGDLELFRTVQEKFLDTFAQDRTHNLIVRLRHNVIRTGLRNISI 365
> ECU05g1540
Length=376
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 0/53 (0%)
Query 1 YREIVLPVRSGDLHAFAAVLQQHELRFKLDDTFTLLRRLHQNVIRAGLRIISL 53
Y ++ V+ D+ F L+ ++ + + +RL QNVI+ G+R IS+
Sbjct 232 YFKLASAVKRADIKKFEETLESNKDELMSQGLYFVAKRLSQNVIQEGIRKISV 284
> Hs20541815
Length=312
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query 13 LHAFAAVLQQHELRFKLDDTFTLLRRLH-----QNVIRAG 47
L +F+ L++HEL L D T L+R QNV RAG
Sbjct 78 LTSFSGKLREHELNSLLFDVHTTLKRHQSKTKSQNVFRAG 117
> At2g19560
Length=244
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 0/43 (0%)
Query 1 YREIVLPVRSGDLHAFAAVLQQHELRFKLDDTFTLLRRLHQNV 43
Y +IV +R GDL LQ+HE RF + +L +L V
Sbjct 194 YTKIVQALRKGDLRLLRHALQEHEDRFLRSGVYLVLEKLELQV 236
Lambda K H
0.333 0.146 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1203243282
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40