bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_1885_orf1
Length=101
Score E
Sequences producing significant alignments: (Bits) Value
Hs5031677 33.1 0.14
Hs6996005 32.7 0.17
Hs6996007 32.7 0.17
7293152 32.0 0.27
Hs22042377 32.0 0.32
At2g14120 30.8 0.56
CE29474 29.6 1.5
At5g44180 28.5 3.3
> Hs5031677
Length=699
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 0/34 (0%)
Query 68 IRRRLDAYFGLVLHNVRDTVPKKIGFFLVRQLQD 101
I R + +YF +V N++D+VPK + FLV ++D
Sbjct 610 IERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKD 643
> Hs6996005
Length=736
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 0/34 (0%)
Query 68 IRRRLDAYFGLVLHNVRDTVPKKIGFFLVRQLQD 101
I R + +YF +V N++D+VPK + FLV ++D
Sbjct 647 IERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKD 680
> Hs6996007
Length=710
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 0/34 (0%)
Query 68 IRRRLDAYFGLVLHNVRDTVPKKIGFFLVRQLQD 101
I R + +YF +V N++D+VPK + FLV ++D
Sbjct 621 IERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKD 654
> 7293152
Length=819
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 62 EQFIQEIRRRLDAYFGLVLHNVRDTVPKKIGFFLVRQLQD 101
E+ ++ IR +D+Y +V RD VPK I ++ +D
Sbjct 651 ERQVETIRNLVDSYMKIVTKTTRDMVPKAIMMLIINNAKD 690
> Hs22042377
Length=863
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 62 EQFIQEIRRRLDAYFGLVLHNVRDTVPKKIGFFLVRQLQD 101
E+ ++ IR +D+Y ++ +RD +PK I ++ ++D
Sbjct 650 ERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKD 689
> At2g14120
Length=782
Score = 30.8 bits (68), Expect = 0.56, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query 40 QQVQNQMSTLWASKD----KKKPVYSEQFIQEI---RRRLDAYFGLVLHNVRDTVPKKIG 92
Q+V +ST++ + K +SEQ EI + L +Y+ +V NV D VPK I
Sbjct 624 QEVYQNLSTIYLKEPPTILKSSETHSEQESVEIEITKLLLKSYYDIVRKNVEDLVPKAIM 683
Query 93 FFLV 96
FLV
Sbjct 684 HFLV 687
> CE29474
Length=700
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 0/34 (0%)
Query 68 IRRRLDAYFGLVLHNVRDTVPKKIGFFLVRQLQD 101
I R + YF +V N++D+VPK I LV ++D
Sbjct 616 IERLIRNYFIIVRKNIQDSVPKAIMALLVNFVRD 649
> At5g44180
Length=1694
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 0/49 (0%)
Query 20 GPDGRPLQQPSHAERAQQMLQQVQNQMSTLWASKDKKKPVYSEQFIQEI 68
G G P++ PSH + +Q + S + KD +P+ QFI E+
Sbjct 169 GAFGMPIEMPSHRKATRQAFETNIYVRSDVKPIKDHVRPIREYQFIPEL 217
Lambda K H
0.320 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1184494980
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40