bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_2041_orf1
Length=78
Score E
Sequences producing significant alignments: (Bits) Value
Hs4885111 31.6 0.36
At3g56800 30.8 0.68
At2g41110 30.8 0.68
At2g27030 30.8 0.68
YBR109c 30.4 0.76
7301425 30.4 0.89
7303485 29.3 1.9
CE13902 29.3 1.9
At3g43810 29.3 1.9
CE27325 29.3 2.0
Hs4885109 28.5 2.7
Hs4502549 28.5 2.9
7304128 27.7 5.8
CE01236 26.9 8.5
> Hs4885111
Length=149
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 0/45 (0%)
Query 1 NAVSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLKA 45
+ E R +D G + A LRHV + +SD VDE+++A
Sbjct 84 EEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRA 128
> At3g56800
Length=149
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 3 VSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
+ E R +D G + A LRHV + ++D VDE++K
Sbjct 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIK 127
> At2g41110
Length=149
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 3 VSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
+ E R +D G + A LRHV + ++D VDE++K
Sbjct 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIK 127
> At2g27030
Length=149
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 3 VSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
+ E R +D G + A LRHV + ++D VDE++K
Sbjct 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIK 127
> YBR109c
Length=147
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 5 ELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
E + +D G+ + A L+HV ++ ++DA VD++L+
Sbjct 88 EAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLR 127
> 7301425
Length=152
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 0/41 (0%)
Query 22 LLRHVFRAMRRIVSDAHVDELLKANVLQRLIAIVKNVNSDI 62
LL+ +F+ +R+ + ++ LKAN L+ L ++ + N+D+
Sbjct 27 LLQKIFKQQQRVEEEQNLKNALKANSLESLESMENSRNADL 67
> 7303485
Length=149
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 3 VSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
+ E R +D G + A LRHV + ++D VDE+++
Sbjct 86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 127
> CE13902
Length=149
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 3 VSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
+ E R +D G + A LRHV + ++D VDE+++
Sbjct 86 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 127
> At3g43810
Length=149
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 3 VSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
+ E R +D G + A LRHV + ++D VDE+++
Sbjct 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIR 127
> CE27325
Length=116
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 3 VSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
+ E R +D G + A LRHV + ++D VDE+++
Sbjct 35 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 76
> Hs4885109
Length=152
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 3 VSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
+ E R +D G + A LRHV + ++D VDE+++
Sbjct 89 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 130
> Hs4502549
Length=149
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 3 VSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLK 44
+ E R +D G + A LRHV + ++D VDE+++
Sbjct 86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 127
> 7304128
Length=148
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 0/45 (0%)
Query 1 NAVSELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLKA 45
+ + E R +D + G TT L++VF A+ +SD ++E+++
Sbjct 83 DELREAFRIFDKDNNGYITTTELKNVFTALGVKLSDDELEEMIRE 127
> CE01236
Length=153
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 0/41 (0%)
Query 5 ELIRCWDDYDAGMYTTALLRHVFRAMRRIVSDAHVDELLKA 45
E ++ +D + G A LRH+ A+ +S DELLK
Sbjct 87 EGLKVFDKEETGKILAAELRHILLALGERLSADEADELLKG 127
Lambda K H
0.328 0.140 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1171925608
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40