bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_2042_orf1
Length=75
Score E
Sequences producing significant alignments: (Bits) Value
Hs4504623 36.2 0.017
Hs20470741 32.7 0.16
Hs7662212 32.7 0.18
At1g08840 32.7 0.18
YMR080c 32.3 0.19
CE23725 31.6 0.38
CE02219 31.6 0.38
At2g03270 31.2 0.49
ECU10g1640 30.4 0.74
CE19303 30.0 0.96
7291108 30.0 1.2
YGR248w 29.3 1.9
At4g15570 29.3 1.9
SPAC6G9.10c 28.9 2.2
7303245 27.7 5.6
> Hs4504623
Length=993
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 0/35 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKRHIDEFA 35
L GDHKQLPPT VS +A+ G ++ +R +E+
Sbjct 397 LAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYG 431
> Hs20470741
Length=1060
Score = 32.7 bits (73), Expect = 0.16, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 0/29 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKR 29
L+GDH+QLPP +++REA G + KR
Sbjct 784 LVGDHQQLPPLVLNREARALGMSESLFKR 812
> Hs7662212
Length=828
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 0/29 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKR 29
L+GD KQLPPT++S +A + G D + R
Sbjct 355 LVGDPKQLPPTVISMKAQEYGYDQSMMAR 383
> At1g08840
Length=1296
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 0/29 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKR 29
L+GDH QLPP + S EA + G I+ +R
Sbjct 1042 LVGDHYQLPPLVQSTEARENGMGISLFRR 1070
> YMR080c
Length=971
Score = 32.3 bits (72), Expect = 0.19, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 0/21 (0%)
Query 1 LIGDHKQLPPTIVSREASDGG 21
L+GDH+QL P I+ R+A+D G
Sbjct 595 LVGDHQQLGPVILERKAADAG 615
> CE23725
Length=1069
Score = 31.6 bits (70), Expect = 0.38, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 0/29 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKR 29
L+GD KQL P +VSR+A G+ I++ ++
Sbjct 812 LVGDCKQLTPLVVSRKAKQEGAGISTMEK 840
> CE02219
Length=1105
Score = 31.6 bits (70), Expect = 0.38, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 0/29 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKR 29
L+GD KQL P +VSR+A G+ I++ ++
Sbjct 848 LVGDCKQLTPLVVSRKAKQEGAGISTMEK 876
> At2g03270
Length=635
Score = 31.2 bits (69), Expect = 0.49, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKRHIDEFA 35
L GDH QLPPTI S EA G T +R D +
Sbjct 387 LAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYG 421
> ECU10g1640
Length=782
Score = 30.4 bits (67), Expect = 0.74, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 0/21 (0%)
Query 1 LIGDHKQLPPTIVSREASDGG 21
L+GDHKQL PTI+ ++ + G
Sbjct 525 LVGDHKQLGPTILCKKVAQAG 545
> CE19303
Length=693
Score = 30.0 bits (66), Expect = 0.96, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 0/35 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKRHIDEFA 35
L+GD KQLP ++S +A G ++ ++ +EF+
Sbjct 431 LVGDQKQLPAVVLSDKAMKGNFKLSLMEKLAEEFS 465
> 7291108
Length=1119
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 0/29 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKR 29
L+GD +QLPP + S+EA G+D T +R
Sbjct 812 LVGDPEQLPPIVRSKEARQRGADETLFQR 840
> YGR248w
Length=255
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 0/58 (0%)
Query 3 GDHKQLPPTIVSREASDGGSDITSQKRHIDEFAWFLPAIEELLCLSVSLDGQAWRFAP 60
G+ L PT+ + S G T+ ++ +E+A LPA +L+ L DG P
Sbjct 103 GNQLNLGPTVYTINESLIGGGETANRKIAEEYASMLPASFDLILLGCGEDGHTCSLFP 160
> At4g15570
Length=525
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 0/21 (0%)
Query 1 LIGDHKQLPPTIVSREASDGG 21
L+GD KQLP T++S A D G
Sbjct 225 LVGDPKQLPATVISTVAQDSG 245
> SPAC6G9.10c
Length=1687
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 16/18 (88%), Gaps = 0/18 (0%)
Query 1 LIGDHKQLPPTIVSREAS 18
L+GD QLPPT++S++A+
Sbjct 1401 LVGDPNQLPPTVLSKKAA 1418
> 7303245
Length=1194
Score = 27.7 bits (60), Expect = 5.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 0/29 (0%)
Query 1 LIGDHKQLPPTIVSREASDGGSDITSQKR 29
L GDHKQL P + S+ A++ G +T +R
Sbjct 652 LSGDHKQLGPVLQSQRANEWGLGLTLFER 680
Lambda K H
0.320 0.137 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1181410888
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40