bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_2256_orf3
Length=52
Score E
Sequences producing significant alignments: (Bits) Value
CE21971 40.0 0.001
YER172c 38.5 0.003
SPAC9.03c 36.2 0.016
Hs22042312 33.1 0.13
At1g20960 33.1 0.14
At2g42270 31.2 0.44
> CE21971
Length=2145
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
SA++EFG++P+R E+ +L+ +A+R+ +L FT K +L+HAH
Sbjct 1849 SASSEFGNVPMRHKEDVILRQLAERLPGQLKNQ-KFTDPHVKVNLLIHAH 1897
> YER172c
Length=2163
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 0/50 (0%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
S A EF S+PLR G+ +L +++R+ L+ P S K +LL A+
Sbjct 1884 STAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAY 1933
> SPAC9.03c
Length=2176
Score = 36.2 bits (82), Expect = 0.016, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
++AAE+ LP+R E+ VL+ I R+ ++L ++ ++ TK+ +LL AH
Sbjct 1886 TSAAEYEQLPIRKYEDIVLERIHSRLPVRL-SNPNYEDPHTKSFILLAAH 1934
> Hs22042312
Length=2136
Score = 33.1 bits (74), Expect = 0.13, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query 1 SAAAEFGSLPLRPGEETVLKGIAQRIGLKLPASIDFTKASTKALVLLHAH 50
S AAE+ ++P+R E+ +L+ +AQ++ KL + F K +LL AH
Sbjct 1850 SNAAEYENIPIRHHEDNLLRQLAQKVPHKL-NNPKFNDPHVKTNLLLQAH 1898
> At1g20960
Length=2171
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query 1 SAAAEFGSLPLRPGEETVLKGIA--QRIGLKLPASIDFTKASTKALVLLHAH 50
++A+E+ +P+RPGEE ++ + QR + P D KA LL AH
Sbjct 1877 TSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTD---PHVKANALLQAH 1925
> At2g42270
Length=2172
Score = 31.2 bits (69), Expect = 0.44, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query 1 SAAAEFGSLPLRPGEETVLKGIA--QRIGLKLPASIDFTKASTKALVLLHAH 50
++A+E+ +P+RPGEE ++ + QR + P D K LL AH
Sbjct 1878 TSASEYDLIPIRPGEEDAVRRLINHQRFSFQNPRCTD---PRVKTSALLQAH 1926
Lambda K H
0.319 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1158678716
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40