bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_2306_orf1
Length=56
Score E
Sequences producing significant alignments: (Bits) Value
At4g08960 52.0 3e-07
Hs10880987 50.4 7e-07
Hs22046124 50.4 8e-07
7295814 39.3 0.002
YIL153w 36.2 0.014
SPAC4F10.04 33.1 0.14
CE27321 30.4 0.78
Hs22062496 30.0 0.96
> At4g08960
Length=401
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 29/37 (78%), Gaps = 0/37 (0%)
Query 20 ALIEVLQRLLQWVDEIPPIEQPTRFGNQAFKTWCRRL 56
A++ +L+ LLQW+DEIPP +Q R+GN +F++W RL
Sbjct 149 AIVSILETLLQWIDEIPPAQQSARYGNVSFRSWHERL 185
> Hs10880987
Length=323
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%), Gaps = 0/42 (0%)
Query 15 NKACWALIEVLQRLLQWVDEIPPIEQPTRFGNQAFKTWCRRL 56
++A L+ +L L +W+DE PP++QP+RFGN+A++TW +L
Sbjct 71 SEAIEKLLALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKL 112
> Hs22046124
Length=408
Score = 50.4 bits (119), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 32/42 (76%), Gaps = 0/42 (0%)
Query 15 NKACWALIEVLQRLLQWVDEIPPIEQPTRFGNQAFKTWCRRL 56
++A L+ +L L +W+DE PP++QP+RFGN+A++TW +L
Sbjct 156 SEAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKL 197
> 7295814
Length=398
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
Query 21 LIEVLQRLLQWVDEIPPIEQPTRFGNQAFKTWCRRL 56
L+ + L + V++ PP+EQP RFGN+A++ W + +
Sbjct 66 LLRLFDALEKLVEQNPPLEQPQRFGNKAYRDWAQAM 101
> YIL153w
Length=393
Score = 36.2 bits (82), Expect = 0.014, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 0/37 (0%)
Query 20 ALIEVLQRLLQWVDEIPPIEQPTRFGNQAFKTWCRRL 56
L+ VL +L +DE PP+ P R+GN A + W +L
Sbjct 69 GLMGVLDKLAHLIDETPPLPGPRRYGNLACREWHHKL 105
> SPAC4F10.04
Length=325
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 0/36 (0%)
Query 21 LIEVLQRLLQWVDEIPPIEQPTRFGNQAFKTWCRRL 56
L+ +L R+ + +PP RFGN AF+ W +L
Sbjct 76 LVRILCRVKEITKTVPPASGRHRFGNPAFRIWHEKL 111
> CE27321
Length=375
Score = 30.4 bits (67), Expect = 0.78, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query 20 ALIEVLQRLLQWVDEIPPIE-QPTRFGNQAFKTWCRRL 56
+ I++L +L +W +EIP + RFGN+A++ + +L
Sbjct 59 SFIDMLDKLEKWAEEIPLEDVSEQRFGNKAYRKFYEKL 96
> Hs22062496
Length=1523
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 0/35 (0%)
Query 1 SYPTVAEDKQQLPANKACWALIEVLQRLLQWVDEI 35
S P AE+ ++LP ++A AL+ Q LL+W E+
Sbjct 1016 SSPEKAEEDRRLPGSQAPPALVSSSQSLLEWCQEV 1050
Lambda K H
0.322 0.135 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1194096762
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40