bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_0019_orf3
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_036540 RRM domain-containing protein ; K12898 heter... 236 8e-62
cpv:cgd1_350 CG8205/fusilli (animal)- like, 2x RRM domains, in... 140 3e-33
mmu:207920 Esrp1, 2210008M09Rik, A630065D16, BC031468, MGC2580... 100 6e-21
hsa:54845 ESRP1, FLJ20171, RBM35A, RMB35A; epithelial splicing... 99.8 1e-20
dre:572992 esrp2, FLJ20171, MGC55721, MGC77254, cb404, fa07a06... 97.1 5e-20
xla:379211 esrp1, MGC53361, rbm35a; epithelial splicing regula... 96.3 1e-19
hsa:80004 ESRP2, FLJ21918, FLJ22248, RBM35B; epithelial splici... 94.4 4e-19
mmu:77411 Esrp2, 9530027K23Rik, Rbm35b; epithelial splicing re... 94.0 6e-19
dre:560190 esrp1, rbm35a, wu:fi28a07, zgc:154050; epithelial s... 93.2 9e-19
ath:AT3G20890 RNA binding / nucleic acid binding / nucleotide ... 88.6 2e-17
cel:ZK1067.6 sym-2; SYnthetic lethal with Mec family member (s... 88.2 3e-17
mmu:98758 Hnrnpf, 4833420I20Rik, AA407306, Hnrpf, MGC101981, M... 87.4 5e-17
dre:402984 hnrnph1, MGC77712, zgc:77712; heterogeneous nuclear... 86.7 9e-17
hsa:3185 HNRNPF, HNRPF, MGC110997, OK/SW-cl.23, mcs94-1; heter... 86.7 9e-17
mmu:59013 Hnrnph1, AI642080, E430005G16Rik, Hnrnph, Hnrph1; he... 86.3 1e-16
xla:100158276 grsf1; G-rich RNA sequence binding factor 1 86.3
hsa:3187 HNRNPH1, DKFZp686A15170, HNRPH, HNRPH1, hnRNPH; heter... 85.9 1e-16
dre:321556 hnrnph1l, fb19a06, wu:fb19a06, zgc:55399, zgc:85960... 85.1 2e-16
mmu:56258 Hnrnph2, DXHXS1271E, Ftp-3, Ftp3, H', HNRNP, Hnrph2;... 85.1 2e-16
xla:432071 hnrnph1-a, MGC78776, hnrnph, hnrnph2, hnrph, hnrph1... 84.7 3e-16
hsa:3188 HNRNPH2, FTP3, HNRPH', HNRPH2, hnRNPH'; heterogeneous... 84.7 3e-16
xla:446758 hnrnph1-b, MGC130700, MGC80081, hnrnph, hnrnph1, hn... 81.3 3e-15
ath:AT5G66010 RNA binding / nucleic acid binding / nucleotide ... 77.8 3e-14
cel:Y73B6BL.33 hypothetical protein; K12898 heterogeneous nucl... 77.0 6e-14
mmu:231413 Grsf1, B130010H02, BB232551, C80280, D5Wsu31e; G-ri... 75.5 2e-13
hsa:2926 GRSF1, FLJ13125; G-rich RNA sequence binding factor 1 68.2
xla:494658 hnrnph3, hnrph3; heterogeneous nuclear ribonucleopr... 65.9 2e-10
dre:563249 grsf1, MGC153305, wu:fb62c04, zgc:153305; G-rich RN... 64.3 4e-10
mmu:432467 Hnrnph3, AA693301, AI666703, Hnrph3; heterogeneous ... 58.5 2e-08
hsa:3189 HNRNPH3, 2H9, FLJ34092, HNRPH3; heterogeneous nuclear... 58.5 2e-08
dre:387255 rbm19, npo; RNA binding motif protein 19; K14787 mu... 57.8 5e-08
xla:379683 rbm12, MGC68861, SWAN; RNA binding motif protein 12 56.2
hsa:10137 RBM12, HRIHFB2091, KIAA0765, SWAN; RNA binding motif... 55.5 2e-07
mmu:75710 Rbm12, 5730420G12Rik, 9430070C08Rik, AI852903, MGC30... 53.9 6e-07
pfa:PF10_0235 RNA binding protein, putative 53.5 8e-07
cel:W02D3.11 hrpf-1; HnRNP F homolog family member (hrpf-1) 52.8 1e-06
dre:445379 rbm12, zgc:193560, zgc:193570; RNA binding motif pr... 52.4 2e-06
xla:494769 rbm19; RNA binding motif protein 19; K14787 multipl... 50.1 8e-06
mmu:77604 C430048L16Rik, AV299215, MGC91091, Rbm12bb; RIKEN cD... 46.6 8e-05
mmu:72397 Rbm12b, 3000004N20Rik, Rbm12ba; RNA binding motif pr... 46.6 8e-05
xla:379184 MGC132368; hypothetical protein MGC53694 45.4 2e-04
hsa:389677 RBM12B, MGC:33837; RNA binding motif protein 12B 44.7 3e-04
mmu:74111 Rbm19, 1200009A02Rik, AV302714, KIAA0682, NPO; RNA b... 44.7 4e-04
hsa:9904 RBM19, DKFZp586F1023, KIAA0682; RNA binding motif pro... 43.5 8e-04
bbo:BBOV_III001020 17.m07117; hypothetical protein 42.7 0.001
ath:AT1G71770 PAB5; PAB5 (POLY(A)-BINDING PROTEIN 5); RNA bind... 40.8 0.005
dre:100330634 RNA binding motif protein 12-like 40.4 0.007
tpv:TP03_0737 hypothetical protein 38.9 0.017
tgo:TGME49_094810 RRM domain-containing protein 37.7 0.043
xla:398766 rbm12b, MGC68792; RNA binding motif protein 12B 37.4 0.050
> tgo:TGME49_036540 RRM domain-containing protein ; K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=513
Score = 236 bits (601), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 151/200 (75%), Gaps = 4/200 (2%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
+RLRGLPWDV E+ +I F KPVV + +V +C+G +KR TGEAYV + +R+ A++
Sbjct 54 VRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAIKD 113
Query 128 LHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMN--SGTRDGRDADVKGLNLTVLKLRGLP 185
LHGR++G RWIEVFR+S E+F++A RR VM SG D DA + +NL V+KLRGLP
Sbjct 114 LHGRLLGTRWIEVFRASEEEFQKADDRRKTVMAAISGNTDSLDASRR-MNLNVVKLRGLP 172
Query 186 WTCTDNDVVNFFQ-EHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKY 244
W+C++N++V FF+ E GF+I D VVLGV DGR++GIA+VELP A+ A+E LH+KY
Sbjct 173 WSCSENEIVRFFKAEGGFDIHSDDVVLGVTGDGRLSGIAFVELPSPDVAEKAREVLHKKY 232
Query 245 LGRRFVEVYPSTREEMQRAK 264
+GRRF+EVYP+TRE+MQRAK
Sbjct 233 MGRRFIEVYPATREDMQRAK 252
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
V++LRGLPW + +V+ FF+ + D+V++ + D R G AYV+LPD + A
Sbjct 53 VVRLRGLPWDVQEENVIAFFKPV-VALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI 111
Query 238 EKLHRKYLGRRFVEVYPSTREEMQRA 263
+ LH + LG R++EV+ ++ EE Q+A
Sbjct 112 KDLHGRLLGTRWIEVFRASEEEFQKA 137
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 7/96 (7%)
Query 170 DVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLG--VAVDGRMNGIAYVEL 227
D + VL+LRGLP++ + +V FF HGF + + +L + +DGR +G AYV+
Sbjct 407 DTANWSAQVLRLRGLPYSANEQHIVQFF--HGFHM---AAILPSTIPIDGRPSGEAYVQF 461
Query 228 PDAATADAAKEKLHRKYLGRRFVEVYPSTREEMQRA 263
DAA A A + + + +R +E++PS+++EM+ A
Sbjct 462 VDAAEALRAFQAKNGGRMDKRMIELFPSSKQEMEFA 497
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
+RLRGLP+ NE I++F L + + + R +GEAYV A +
Sbjct 416 LRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI--DGRPSGEAYVQFVDAAEALRAFQA 473
Query 128 LHGRMMGPRWIEVFRSSAEDFERAMQ 153
+G M R IE+F SS ++ E A Q
Sbjct 474 KNGGRMDKRMIELFPSSKQEMEFAAQ 499
> cpv:cgd1_350 CG8205/fusilli (animal)- like, 2x RRM domains,
involved in RNA metabolism
Length=569
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 140/259 (54%), Gaps = 15/259 (5%)
Query 11 DGLAACRCMCAILFLLLSKGLLLLKEHSINVEDPSSGETLKPVGAPAANGFAGVGTHIRL 70
D + C+CM I +LL KG++ + + +NV + L+ + V +RL
Sbjct 270 DLSSICKCMARIYLILLKKGIIHVHQERVNVSEYKDSPHLEN---------SLVRPVVRL 320
Query 71 RGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRTLHG 130
RGLPW II F P+ ++ D+ + + ++TGEAYV + + ++++ LHG
Sbjct 321 RGLPWKAAVLDIIAFFNPICRISSYDIAISYNKDGKMTGEAYVLLPSIKAYELSLTLLHG 380
Query 131 RMMGPRWIEVFRSSAEDFERAMQ----RRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPW 186
+ MG RWIEV SS ++F +Q ++ S D + D + N +VL+LRGLPW
Sbjct 381 KRMGKRWIEVLPSSTKEFLICLQITSLKKQNQNPSIFNDNKIID-RYYNRSVLRLRGLPW 439
Query 187 TCTDNDVVNFFQEHG-FEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYL 245
+ T+ ++V FF G + + V LG+ + R +G A++ LP A A+ L+R+ +
Sbjct 440 STTEIEIVQFFISGGIYGLNASDVFLGITENQRASGEAWIILPHKCDAFDAQRILNRRVI 499
Query 246 GRRFVEVYPSTREEMQRAK 264
G+R++EV+ S+ +E+ A+
Sbjct 500 GKRYIEVFISSFQELTTAR 518
> mmu:207920 Esrp1, 2210008M09Rik, A630065D16, BC031468, MGC25805,
Rbm35a; epithelial splicing regulatory protein 1; K14947
epithelial splicing regulatory protein 1/2
Length=681
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query 65 GTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVA 124
T +R RGLPW ++ I RF K +++ + +C+ R GEA V + + RD+A
Sbjct 224 STVVRARGLPWQSSDQDIARFFK-GLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 282
Query 125 VRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGL 184
++ H MG R+IEV++++ EDF + + GT + + N ++++RGL
Sbjct 283 LQR-HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEVAQFLSKENQVIVRMRGL 333
Query 185 PWTCTDNDVVNFFQEHGFEIGFDSVVLGVAV-DGRMNGIAYVELPDAATADAAKEKLHRK 243
P+T T +VV FF +H G +L V DGR G A+V A A K H++
Sbjct 334 PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKE 392
Query 244 YLGRRFVEVYPSTREEMQR 262
LG+R++E++ ST E+Q+
Sbjct 393 LLGKRYIELFRSTAAEVQQ 411
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 10/202 (4%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVT--ELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
+R+RGLP+ + ++ F +T + + + R TG+A+V + A+
Sbjct 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLT-------V 178
R H ++G R+IE+FRS+A + ++ + R + V
Sbjct 388 RK-HKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
++LRGLP+ T D+++F E +I V + + GR +G A++++ A A +
Sbjct 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQ 506
Query 239 KLHRKYLGRRFVEVYPSTREEM 260
K H+K + R+VEV+ + EEM
Sbjct 507 KYHKKTMKDRYVEVFQCSAEEM 528
> hsa:54845 ESRP1, FLJ20171, RBM35A, RMB35A; epithelial splicing
regulatory protein 1; K14947 epithelial splicing regulatory
protein 1/2
Length=677
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 12/198 (6%)
Query 66 THIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
T +R RGLPW ++ I RF K + ++ + +C+ R GEA V + + RD+A+
Sbjct 225 TVVRARGLPWQSSDQDIARFFKGL-NIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLAL 283
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLP 185
+ H MG R+IEV++++ EDF + + GT + + N ++++RGLP
Sbjct 284 QR-HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEVAQFLSKENQVIVRMRGLP 334
Query 186 WTCTDNDVVNFFQEHGFEIGFDSVVLGVAV-DGRMNGIAYVELPDAATADAAKEKLHRKY 244
+T T +VV FF +H G +L V DGR G A+V A A K H+
Sbjct 335 FTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDL 393
Query 245 LGRRFVEVYPSTREEMQR 262
LG+R++E++ ST E+Q+
Sbjct 394 LGKRYIELFRSTAAEVQQ 411
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVT--ELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
+R+RGLP+ + ++ F +T + + + R TG+A+V + A+
Sbjct 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLT-------V 178
R H ++G R+IE+FRS+A + ++ + R + V
Sbjct 388 RK-HKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
++LRGLP+ T D+++F E +I V + + GR +G A++++ A A A +
Sbjct 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506
Query 239 KLHRKYLGRRFVEVYPSTREEM 260
K H+K + R+VEV+ + EEM
Sbjct 507 KCHKKNMKDRYVEVFQCSAEEM 528
> dre:572992 esrp2, FLJ20171, MGC55721, MGC77254, cb404, fa07a06,
rbm35b, sb:cb404, zgc:77254; epithelial splicing regulatory
protein 2; K14947 epithelial splicing regulatory protein
1/2
Length=736
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 105/198 (53%), Gaps = 12/198 (6%)
Query 66 THIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
T IR RGLPW ++ I RF K +++ + V +C+ R GEA V ++ RD+A+
Sbjct 224 TVIRARGLPWQSSDQDIARFFK-GLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMAL 282
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLP 185
H MG R+IEV++++ E+F + + GT + + N ++++RGLP
Sbjct 283 DR-HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNEVAQFLSKENQMIIRMRGLP 333
Query 186 WTCTDNDVVNFF-QEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKY 244
+T T DV+ F E G + ++ DGR G A+V A A +K H++
Sbjct 334 FTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNALKK-HKQI 392
Query 245 LGRRFVEVYPSTREEMQR 262
LG+R++E++ ST E+Q+
Sbjct 393 LGKRYIELFRSTAAEVQQ 410
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 18/209 (8%)
Query 68 IRLRGLPWDVNEDAIIRFLKP---VVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVA 124
IR+RGLP+ ++ FL P V D TE + V + R TG+A+V + A
Sbjct 327 IRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYP-DGRPTGDAFVLFACEEYAQNA 385
Query 125 VRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDAD-------------V 171
++ H +++G R+IE+FRS+A + ++ + R ++ T
Sbjct 386 LKK-HKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLATPPLIT 444
Query 172 KGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAA 231
G ++LRGLP+T D++ F EH +I V + + GR +G A++++ A
Sbjct 445 TGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSAD 504
Query 232 TADAAKEKLHRKYLGRRFVEVYPSTREEM 260
A +K H+K + R+VEV+ + EEM
Sbjct 505 RAFMVAQKCHKKMMKDRYVEVFQCSTEEM 533
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATA 233
+++++GLP+ D+++FFQ G+++ DSV++ G+ +G A V P A
Sbjct 660 LVRMQGLPYNAGVKDILSFFQ--GYQLQADSVLVLYNWSGQRSGEALVTFPSEKAA 713
> xla:379211 esrp1, MGC53361, rbm35a; epithelial splicing regulatory
protein 1; K14947 epithelial splicing regulatory protein
1/2
Length=688
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 106/198 (53%), Gaps = 12/198 (6%)
Query 66 THIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
T IR RGLPW ++ I RF K + ++ + +C+ R GEA V + + RD+A+
Sbjct 226 TIIRARGLPWQSSDQDIARFFKGL-NIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLAL 284
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLP 185
+ H MG R+IEV++++ EDF + + GT + + N ++++RGLP
Sbjct 285 QR-HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEVAQFLSKENQVIVRMRGLP 335
Query 186 WTCTDNDVVNFF-QEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKY 244
+T T +V+ FF Q+ G + ++ D R G A+V A A +K H++
Sbjct 336 FTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNALKK-HKEL 394
Query 245 LGRRFVEVYPSTREEMQR 262
LG+R++E++ ST E+Q+
Sbjct 395 LGKRYIELFRSTAAEVQQ 412
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 10/202 (4%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVT--ELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
+R+RGLP+ + ++ F VT + + + R TG+A+V + A+
Sbjct 329 VRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNAL 388
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADV------KGLNL-TV 178
+ H ++G R+IE+FRS+A + ++ + R + V +N+
Sbjct 389 KK-HKELLGKRYIELFRSTAAEVQQVLNRYSSAPLIPLPTPPIIPVLPQPFIPPVNVRDC 447
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
++LRGLP+ T D++ F E +I V + + GR +G +++++ A A A +
Sbjct 448 IRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLAAQ 507
Query 239 KLHRKYLGRRFVEVYPSTREEM 260
K H+K + R+VEV+ + EEM
Sbjct 508 KCHKKTMKDRYVEVFQCSAEEM 529
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 24/174 (13%)
Query 91 DVTELDV---CVCVGLNKRVTGEAYVNVHTTDMRDVAVRTLHGRMMGPRWIEVFRSSAED 147
D+ ELDV +G K+ T Y DM D+ V + E + D
Sbjct 153 DINELDVHAMASFLGFEKKNTHYRYGASEVDDMGDIIVTLIS---------EPYNYKFSD 203
Query 148 FERAMQRRVAVMNSGTRDGRDADVKGLN-LTVLKLRGLPWTCTDNDVVNFFQEHGFEIGF 206
ER +N G + ++ ++ T+++ RGLPW +D D+ FF+ G I
Sbjct 204 PER--------VNYKFESGTCSKLEMIDDNTIIRARGLPWQSSDQDIARFFK--GLNIAK 253
Query 207 DSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRRFVEVYPSTREEM 260
L + GR NG A V D A ++ H+ ++G R++EVY +T E+
Sbjct 254 GGAALCLNAQGRRNGEALVRFVSEEHRDLALQR-HKHHMGNRYIEVYKATGEDF 306
> hsa:80004 ESRP2, FLJ21918, FLJ22248, RBM35B; epithelial splicing
regulatory protein 2; K14947 epithelial splicing regulatory
protein 1/2
Length=717
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVT--ELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
+RLRGLP+ ++ FL P VT + + R TG+A+ ++ A+
Sbjct 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVK-----GLNLTVLK 180
R H M+G R+IE+FRS+A + ++ + R + T + G ++
Sbjct 410 RR-HKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVR 468
Query 181 LRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKL 240
LRGLP+T T D+++F E +I V + + GR +G A++++ A A AA ++
Sbjct 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRC 528
Query 241 HRKYLGRRFVEVYPSTREEMQR 262
H+K + R+VEV P + EEM R
Sbjct 529 HKKVMKERYVEVVPCSTEEMSR 550
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query 66 THIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
T +R RGLPW ++ + RF K ++V V +C+ R GEA + ++ RD+A+
Sbjct 247 TVVRARGLPWQSSDQDVARFFK-GLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLP 185
+ H MG R+IEV++++ E+F + + GT + + +L+LRGLP
Sbjct 306 QR-HKHHMGVRYIEVYKATGEEFVK--------IAGGTSLEVARFLSREDQVILRLRGLP 356
Query 186 WTCTDNDVVNFF-QEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKY 244
++ DV+ F E G + ++ DGR G A+ A AA + H+
Sbjct 357 FSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRR-HKGM 415
Query 245 LGRRFVEVYPSTREEMQR 262
LG+R++E++ ST E+Q+
Sbjct 416 LGKRYIELFRSTAAEVQQ 433
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query 68 IRLRGLPWDVNEDAIIRFL-KPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
+RLRGLP+ + I+ FL + D+ V + + R +G+A++ + + + A +
Sbjct 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQ 526
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAM 152
H ++M R++EV S E+ R +
Sbjct 527 RCHKKVMKERYVEVVPCSTEEMSRVL 552
> mmu:77411 Esrp2, 9530027K23Rik, Rbm35b; epithelial splicing
regulatory protein 2; K14947 epithelial splicing regulatory
protein 1/2
Length=717
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTE-LDVCVCV-GLNKRVTGEAYVNVHTTDMRDVAV 125
+RLRGLP+ ++ FL P VT D + V + R TG+A+ ++ A+
Sbjct 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVK-----GLNLTVLK 180
R H M+G R+IE+FRS+A + ++ + R A T + G ++
Sbjct 410 RR-HKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRDCVR 468
Query 181 LRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKL 240
LRGLP+T T D+++F E +I V + + GR +G A++++ A AA ++
Sbjct 469 LRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRC 528
Query 241 HRKYLGRRFVEVYPSTREEMQR 262
H+K + R+VEV P + EEM R
Sbjct 529 HKKMMKERYVEVVPCSTEEMSR 550
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query 66 THIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
T +R RGLPW ++ + RF K +++ V +C+ R GEA + ++ RD+A+
Sbjct 247 TVVRARGLPWQSSDQDVARFFK-GLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLAL 305
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLP 185
+ H MG R+IEV++++ E+F + + GT + + +L+LRGLP
Sbjct 306 QR-HKHHMGVRYIEVYKATGEEFVK--------IAGGTSLEVARFLSREDQVILRLRGLP 356
Query 186 WTCTDNDVVNFF-QEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKY 244
++ DV+ F E G D ++ DGR G A+ A AA + H+
Sbjct 357 FSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR-HKGM 415
Query 245 LGRRFVEVYPSTREEMQR 262
LG+R++E++ ST E+Q+
Sbjct 416 LGKRYIELFRSTAAEVQQ 433
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query 175 NLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATAD 234
N TV++ RGLPW +D DV FF+ G I V L + GR NG A + D+ D
Sbjct 245 NETVVRARGLPWQSSDQDVARFFK--GLNIARGGVALCLNAQGRRNGEALIRFVDSEQRD 302
Query 235 AAKEKLHRKYLGRRFVEVYPSTREEM 260
A ++ H+ ++G R++EVY +T EE
Sbjct 303 LALQR-HKHHMGVRYIEVYKATGEEF 327
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query 68 IRLRGLPWDVNEDAIIRFL-KPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
+RLRGLP+ + I+ FL + D+ V + + R +G+A++ + + + A +
Sbjct 467 VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAAQ 526
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAM 152
H +MM R++EV S E+ R +
Sbjct 527 RCHKKMMKERYVEVVPCSTEEMSRVL 552
> dre:560190 esrp1, rbm35a, wu:fi28a07, zgc:154050; epithelial
splicing regulatory protein 1; K14947 epithelial splicing regulatory
protein 1/2
Length=714
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 12/198 (6%)
Query 66 THIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
T IR RGLPW ++ I RF + +++ + +C+ R GEA V + + RD+A+
Sbjct 225 TVIRARGLPWQSSDQDIARFFR-GLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLAL 283
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLP 185
+ H MG R+IEV++++ EDF + + GT + + + N ++++RGLP
Sbjct 284 QR-HKHHMGGRYIEVYKATGEDFLK--------IAGGTSNEVASFLSRENQIIVRMRGLP 334
Query 186 WTCTDNDVVNFFQEH-GFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKY 244
+ T V+ FF G + ++ DGR G A+V A A +K H+
Sbjct 335 FNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNALKK-HKDM 393
Query 245 LGRRFVEVYPSTREEMQR 262
LG+R++E++ ST E+Q+
Sbjct 394 LGKRYIELFKSTAAEVQQ 411
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 109/208 (52%), Gaps = 17/208 (8%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELD--VCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
+R+RGLP++ + +++F P VT+ + + R TG+A+V + A+
Sbjct 328 VRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNAL 387
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRR-------------VAVMNSGTRDGRDADVK 172
+ H M+G R+IE+F+S+A + ++ + + ++V+ T + A V
Sbjct 388 KK-HKDMLGKRYIELFKSTAAEVQQVLNKYSSAPLIPVAPSPILSVVAPPTFVPQTAAVP 446
Query 173 GLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAAT 232
G+ V +LRGLP+ + D++ F E+G +I V + + GR +G A++++ A
Sbjct 447 GVRDCV-RLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQGRPSGEAFIQMRSAER 505
Query 233 ADAAKEKLHRKYLGRRFVEVYPSTREEM 260
A A ++ H++ + R+VEV+ + +E+
Sbjct 506 AFLAAQRCHKRSMKERYVEVFACSAQEV 533
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query 52 PVGAPAANGFAGVGTHIRLRGLPWDVNEDAIIRFLKPV-VDVTELDVCVCVGLNKRVTGE 110
P P GV +RLRGLP+D + I+ FL D+ V + + R +GE
Sbjct 436 PTFVPQTAAVPGVRDCVRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQGRPSGE 495
Query 111 AYVNVHTTDMRDVAVRTLHGRMMGPRWIEVFRSSAED 147
A++ + + + +A + H R M R++EVF SA++
Sbjct 496 AFIQMRSAERAFLAAQRCHKRSMKERYVEVFACSAQE 532
> ath:AT3G20890 RNA binding / nucleic acid binding / nucleotide
binding; K12898 heterogeneous nuclear ribonucleoprotein F/H
Length=278
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 125/265 (47%), Gaps = 58/265 (21%)
Query 44 PSSGETLKPVGAPAANGFAGVGTHIRLRGLPWDVNEDAIIRFLK--PVVDVTELDVCVCV 101
PSSG P G A +RLRGLP+D E ++ F VVDV + V
Sbjct 22 PSSGFMYNPYGF-VAPPPPPPFPAVRLRGLPFDCAELDVVEFFHGLDVVDV------LFV 74
Query 102 GLNKRVTGEAYVNVHTTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVA---- 157
N +VTGEA+ + D A++ + + MG R++EVFRS+ +++ +A+ VA
Sbjct 75 HRNNKVTGEAFCVLGYPLQVDFALQK-NRQNMGRRYVEVFRSTKQEYYKAIANEVAESRV 133
Query 158 ---------------------------------------VMNSGTRDGRDADVKGLNLTV 178
V + + D D++ + +
Sbjct 134 HGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQRARSSDDGKEDIE--HTGI 191
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
L+LRGLP++ D+++FF++ FE+ D V + V +GR G A+VE +A + AA
Sbjct 192 LRLRGLPFSAGKEDILDFFKD--FELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAMV 249
Query 239 KLHRKYLGRRFVEVYPSTREEMQRA 263
K RK LG R++E++PS+ EE++ A
Sbjct 250 K-DRKTLGSRYIELFPSSVEELEEA 273
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNV-HTTDMRDVAVR 126
+RLRGLP+ ++ I+ F K +++E V V V R TGEA+V + D R V+
Sbjct 192 LRLRGLPFSAGKEDILDFFKDF-ELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAMVK 250
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAMQR 154
+ +G R+IE+F SS E+ E A+ R
Sbjct 251 DR--KTLGSRYIELFPSSVEELEEALSR 276
> cel:ZK1067.6 sym-2; SYnthetic lethal with Mec family member
(sym-2); K14947 epithelial splicing regulatory protein 1/2
Length=618
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query 69 RLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRTL 128
R RGLPW ++ + +F +D+ + +C+ R GE V + + RD+A++
Sbjct 184 RARGLPWQASDHHVAQFFA-GLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKR- 241
Query 129 HGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDA-DVKGLNLTVLKLRGLPWT 187
H + R+IEV+++ ++F M+ T +A + N ++++RGLP+
Sbjct 242 HRNFLLSRYIEVYKAGLDEF----------MHVATGSSTEAMEFVSANAIIVRMRGLPYD 291
Query 188 CTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKL--HRKYL 245
CTD + FF+ D ++ DGR G A+V+ T + A++ L HR+ +
Sbjct 292 CTDAQIRTFFEPLKLT---DKILFITRTDGRPTGDAFVQF---ETEEDAQQGLLKHRQVI 345
Query 246 GRRFVEVYPSTREEMQR 262
G+R++E++ ST E+Q+
Sbjct 346 GQRYIELFKSTAAEVQQ 362
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 101/198 (51%), Gaps = 9/198 (4%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
+R+RGLP+D + I F +P+ +T+ + + R TG+A+V T + +
Sbjct 283 VRMRGLPYDCTDAQIRTFFEPL-KLTD-KILFITRTDGRPTGDAFVQFETEEDAQQGLLK 340
Query 128 LHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADV-KGLNLTVLKLRGLPW 186
H +++G R+IE+F+S+A + ++ + +R ++NS + + ++LRGLP+
Sbjct 341 -HRQVIGQRYIELFKSTAAEVQQVV-KRCNLINSSPAVANAVEAPEEKKKDCVRLRGLPY 398
Query 187 TCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLG 246
T +V F + + F V + G +G A++++ + A A +H ++
Sbjct 399 EATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMS 458
Query 247 ----RRFVEVYPSTREEM 260
+R++EV+ ++ EE+
Sbjct 459 VGKKKRYIEVFQASAEEL 476
> mmu:98758 Hnrnpf, 4833420I20Rik, AA407306, Hnrpf, MGC101981,
MGC36971; heterogeneous nuclear ribonucleoprotein F; K12898
heterogeneous nuclear ribonucleoprotein F/H
Length=415
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 22/204 (10%)
Query 62 AGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGL----NKRVTGEAYVNVHT 117
G G ++LRGLPW + + + FL D T D V R +GEA+V + +
Sbjct 7 GGEGYVVKLRGLPWSCSIEDVQNFLS---DCTIHDGVAGVHFIYTREGRQSGEAFVELES 63
Query 118 TDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLT 177
D +A++ MG R+IEVF+S + + ++ +SG A N
Sbjct 64 EDDVKLALKKDR-ESMGHRYIEVFKSHRTEMDWVLK------HSGPNSADSA-----NDG 111
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
++LRGLP+ CT ++V FF G EI + + L V +G++ G A+V+ A+ A
Sbjct 112 FVRLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query 238 EKLHRKYLGRRFVEVYPSTREEMQ 261
K H++ +G R++EV+ S++EE++
Sbjct 170 GK-HKERIGHRYIEVFKSSQEEVR 192
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 103/271 (38%), Gaps = 81/271 (29%)
Query 52 PVGAPAAN-GFAGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGE 110
P A +AN GF +RLRGLP+ ++ I++F + ++ + + V ++TGE
Sbjct 102 PNSADSANDGF------VRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGE 154
Query 111 A------------------------YVNVHTTDMRDV------AVRTLHGRMMGP----- 135
A Y+ V + +V ++ + + GP
Sbjct 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPG 214
Query 136 ---RWIEVFRSSAEDFERA--------------------------MQRRVAVMNSGTRDG 166
R+I + + + D R+ R ++ SG D
Sbjct 215 TARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDH 274
Query 167 RDAD----VKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGI 222
R D V+ + +RGLP+ T+ND+ NFF + V + + DGR+ G
Sbjct 275 RYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS----PLNPVRVHIEIGPDGRVTGE 330
Query 223 AYVELPDAATADAAKEKLHRKYLGRRFVEVY 253
A VE A AA K R + R++E++
Sbjct 331 ADVEFATHEEAVAAMSK-DRANMQHRYIELF 360
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E+ I F P+ V V + +G + RVTGEA V T + V
Sbjct 287 TGHCVHMRGLPYKATENDIYNFFSPLNPVR---VHIEIGPDGRVTGEADVEFATHE-EAV 342
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A + M R+IE+F +S
Sbjct 343 AAMSKDRANMQHRYIELFLNS 363
> dre:402984 hnrnph1, MGC77712, zgc:77712; heterogeneous nuclear
ribonucleoprotein H1; K12898 heterogeneous nuclear ribonucleoprotein
F/H
Length=403
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 16/200 (8%)
Query 63 GVGTHIRLRGLPWDVNEDAIIRFLKPV-VDVTELDVCVCVGLNKRVTGEAYVNVHTTDMR 121
G G +R+RGLPW + D + RF + + R +GEA+V + +
Sbjct 4 GEGFVVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDL 63
Query 122 DVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKL 181
+AV+ MG R++EVF+S++ + + ++ DG +++L
Sbjct 64 KIAVKKDR-ETMGHRYVEVFKSNSVEMDWVLKHTGPNCPETGGDG-----------LVRL 111
Query 182 RGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLH 241
RGLP+ C+ ++V FF G EI + + L V GR G A+V+ A+ A +K H
Sbjct 112 RGLPFGCSKEEIVQFFA--GLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK-H 168
Query 242 RKYLGRRFVEVYPSTREEMQ 261
++ +G R++E++ S+R E++
Sbjct 169 KERIGHRYIEIFKSSRAEVR 188
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 42/221 (19%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
+RLRGLP+ +++ I++F + ++ + + V R TGEA+V + D+ + A++
Sbjct 109 VRLRGLPFGCSKEEIVQFFAGL-EIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query 128 LHGRMMGPRWIEVFRSSAEDFERAM--QRRVAVMNSGTRDGRDADVKGLNLT-------- 177
H +G R+IE+F+SS + QR+V M + R +G N
Sbjct 168 -HKERIGHRYIEIFKSSRAEVRTHYEPQRKVMGMQRPSPYDRPGGGRGYNSMGRGVSFER 226
Query 178 -------------------------VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLG 212
+ +RGLP+ T+ D+ NFF + V L
Sbjct 227 MRRGGYGGDGRYGDSGSSFQSTTGHCVHMRGLPYRATETDIYNFFS----PLNPVRVHLE 282
Query 213 VAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRRFVEVY 253
+ DGR+ G A VE A AA K + + R+VE++
Sbjct 283 IGPDGRVTGEADVEFATHEDAVAAMSK-DKANMQHRYVELF 322
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E I F P+ V V + +G + RVTGEA V T + V
Sbjct 249 TGHCVHMRGLPYRATETDIYNFFSPLNPVR---VHLEIGPDGRVTGEADVEFATHE-DAV 304
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A + M R++E+F +S
Sbjct 305 AAMSKDKANMQHRYVELFLNS 325
> hsa:3185 HNRNPF, HNRPF, MGC110997, OK/SW-cl.23, mcs94-1; heterogeneous
nuclear ribonucleoprotein F; K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=415
Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 22/204 (10%)
Query 62 AGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGL----NKRVTGEAYVNVHT 117
G G ++LRGLPW + + + FL D T D V R +GEA+V + +
Sbjct 7 GGEGFVVKLRGLPWSCSVEDVQNFLS---DCTIHDGAAGVHFIYTREGRQSGEAFVELGS 63
Query 118 TDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLT 177
D +A++ MG R+IEVF+S + + ++ +SG A N
Sbjct 64 EDDVKMALKKDR-ESMGHRYIEVFKSHRTEMDWVLK------HSGPNSADSA-----NDG 111
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
++LRGLP+ CT ++V FF G EI + + L V +G++ G A+V+ A+ A
Sbjct 112 FVRLRGLPFGCTKEEIVQFFS--GLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 169
Query 238 EKLHRKYLGRRFVEVYPSTREEMQ 261
K H++ +G R++EV+ S++EE++
Sbjct 170 GK-HKERIGHRYIEVFKSSQEEVR 192
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query 154 RRVAVMNSGTRDGRDAD----VKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSV 209
R ++ SG D R D V+ + +RGLP+ T+ND+ NFF + V
Sbjct 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS----PLNPVRV 317
Query 210 VLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRRFVEVY 253
+ + DGR+ G A VE A AA K R + R++E++
Sbjct 318 HIEIGPDGRVTGEADVEFATHEEAVAAMSK-DRANMQHRYIELF 360
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E+ I F P+ V V + +G + RVTGEA V T + V
Sbjct 287 TGHCVHMRGLPYKATENDIYNFFSPLNPVR---VHIEIGPDGRVTGEADVEFATHE-EAV 342
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A + M R+IE+F +S
Sbjct 343 AAMSKDRANMQHRYIELFLNS 363
> mmu:59013 Hnrnph1, AI642080, E430005G16Rik, Hnrnph, Hnrph1;
heterogeneous nuclear ribonucleoprotein H1; K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=449
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 21/210 (10%)
Query 53 VGAPAANGFAGVGTHIRLRGLPWDVNEDAIIRFLKPV-VDVTELDVCVCVGLNKRVTGEA 111
+GA GF +++RGLPW + D + RF + + R +GEA
Sbjct 3 LGAEGGEGFV-----VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEA 57
Query 112 YVNVHTTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADV 171
+V + + D +A++ MG R++EVF+S+ + + ++ DG
Sbjct 58 FVELESEDEVKLALKKDR-ETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDG----- 111
Query 172 KGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAA 231
++LRGLP+ C+ ++V FF G EI + + L V GR G A+V+
Sbjct 112 ------FVRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQE 163
Query 232 TADAAKEKLHRKYLGRRFVEVYPSTREEMQ 261
A+ A +K H++ +G R++E++ S+R E++
Sbjct 164 IAEKALKK-HKERIGHRYIEIFKSSRAEVR 192
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E+ I F P+ V V + +G + RVTGEA V T + V
Sbjct 287 TGHCVHMRGLPYRATENDIYNFFSPLNPVR---VHIEIGPDGRVTGEADVEFATHE-DAV 342
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A + M R++E+F +S
Sbjct 343 AAMSKDKANMQHRYVELFLNS 363
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
+ +RGLP+ T+ND+ NFF + V + + DGR+ G A VE A AA
Sbjct 291 VHMRGLPYRATENDIYNFFS----PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMS 346
Query 239 KLHRKYLGRRFVEVY 253
K + + R+VE++
Sbjct 347 K-DKANMQHRYVELF 360
> xla:100158276 grsf1; G-rich RNA sequence binding factor 1
Length=348
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 104/204 (50%), Gaps = 12/204 (5%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELD-VCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
+R+RGLPW D ++ F D V + + G+A + + + AV
Sbjct 4 VRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIFNRDGKPRGDAVIEFESAEDVQKAVE 63
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLT------VLK 180
H + MG R++EVF + ++ E + R + + S TR + ++ +++
Sbjct 64 Q-HKKYMGQRYVEVFEMNQKEAESLLNRMHSAL-SPTRPSSMSLSPQSSMASPPSDGIVR 121
Query 181 LRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKL 240
LRGLP++C++ D+++FF G +I + + + GR +G A+V+ AD A K
Sbjct 122 LRGLPYSCSEQDIIHFFS--GLDIADEGITFVLDQRGRKSGEAFVQFLSQEHADQALLK- 178
Query 241 HRKYLGRRFVEVYPSTREEMQRAK 264
H++ +G R++E++PS R ++Q A+
Sbjct 179 HKQEIGSRYIEIFPSRRNDVQTAR 202
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query 176 LTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADA 235
+ ++++RGLPW+CT +DV+NFF + G D V DG+ G A +E A
Sbjct 1 MFIVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIFNRDGKPRGDAVIEFESAEDVQK 60
Query 236 AKEKLHRKYLGRRFVEVYPSTREEMQ 261
A E+ H+KY+G+R+VEV+ ++E +
Sbjct 61 AVEQ-HKKYMGQRYVEVFEMNQKEAE 85
> hsa:3187 HNRNPH1, DKFZp686A15170, HNRPH, HNRPH1, hnRNPH; heterogeneous
nuclear ribonucleoprotein H1 (H); K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=449
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query 62 AGVGTHIRLRGLPWDVNEDAIIRFLKPV-VDVTELDVCVCVGLNKRVTGEAYVNVHTTDM 120
G G +++RGLPW + D + RF + + R +GEA+V + + D
Sbjct 7 GGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query 121 RDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLK 180
+A++ MG R++EVF+S+ + + ++ DG ++
Sbjct 67 VKLALKKDR-ETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDG-----------FVR 114
Query 181 LRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKL 240
LRGLP+ C+ ++V FF G EI + + L V GR G A+V+ A+ A +K
Sbjct 115 LRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK- 171
Query 241 HRKYLGRRFVEVYPSTREEMQ 261
H++ +G R++E++ S+R E++
Sbjct 172 HKERIGHRYIEIFKSSRAEVR 192
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E+ I F P+ V V + +G + RVTGEA V T + V
Sbjct 287 TGHCVHMRGLPYRATENDIYNFFSPLNPVR---VHIEIGPDGRVTGEADVEFATHE-DAV 342
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A + M R++E+F +S
Sbjct 343 AAMSKDKANMQHRYVELFLNS 363
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
+ +RGLP+ T+ND+ NFF + V + + DGR+ G A VE A AA
Sbjct 291 VHMRGLPYRATENDIYNFFS----PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMS 346
Query 239 KLHRKYLGRRFVEVY 253
K + + R+VE++
Sbjct 347 K-DKANMQHRYVELF 360
> dre:321556 hnrnph1l, fb19a06, wu:fb19a06, zgc:55399, zgc:85960;
heterogeneous nuclear ribonucleoprotein H1, like; K12898
heterogeneous nuclear ribonucleoprotein F/H
Length=407
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 16/195 (8%)
Query 68 IRLRGLPWDVNEDAIIRFLKPV-VDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
+R+RGLPW + + + RF + + R +GEA+V + + D +AV+
Sbjct 9 VRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAVK 68
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPW 186
MG R++EVF+S+ + + ++ DG +++LRGLP+
Sbjct 69 KDR-ESMGHRYVEVFKSNNVEMDWVLKHTGPNCPETEGDG-----------LVRLRGLPF 116
Query 187 TCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLG 246
C+ ++V FF G EI + + L V GR G A+V+ A+ A +K H++ +G
Sbjct 117 GCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK-HKERIG 173
Query 247 RRFVEVYPSTREEMQ 261
R++E++ S+R E++
Sbjct 174 HRYIEIFKSSRAEVR 188
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 45/224 (20%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
+RLRGLP+ +++ I++F + ++ + + V R TGEA+V + D+ + A++
Sbjct 109 VRLRGLPFGCSKEEIVQFFSGL-EIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query 128 LHGRMMGPRWIEVFRSSAEDFER---------AMQRRVAV------------MNSG---- 162
H +G R+IE+F+SS + MQR M+ G
Sbjct 168 -HKERIGHRYIEIFKSSRAEVRTHYEPPRKGMGMQRPGPYDRPSGGGRGYNGMSRGGSFD 226
Query 163 ----------TRDGRDADVKGLNLTV---LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSV 209
DGR D T + +RGLP+ T+ D+ NFF + V
Sbjct 227 RMRRGGYGGGVSDGRYGDGGNFQSTTGHCVHMRGLPYRATEPDIYNFFS----PLNPVRV 282
Query 210 VLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRRFVEVY 253
+ + DGR+ G A VE A AA + + R+VE++
Sbjct 283 HIEIGPDGRVTGEADVEFATHEDAVAAMSN-DKANMQHRYVELF 325
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query 169 ADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELP 228
AD +G V+++RGLPW+C+ +V FF ++ +GR +G A+VEL
Sbjct 2 ADDEGF---VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELE 58
Query 229 DAATADAAKEKLHRKYLGRRFVEVYPSTREEM 260
A +K R+ +G R+VEV+ S EM
Sbjct 59 SEDDLKIAVKK-DRESMGHRYVEVFKSNNVEM 89
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E I F P+ V V + +G + RVTGEA V T + V
Sbjct 252 TGHCVHMRGLPYRATEPDIYNFFSPLNPVR---VHIEIGPDGRVTGEADVEFATHE-DAV 307
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A + M R++E+F +S
Sbjct 308 AAMSNDKANMQHRYVELFLNS 328
> mmu:56258 Hnrnph2, DXHXS1271E, Ftp-3, Ftp3, H', HNRNP, Hnrph2;
heterogeneous nuclear ribonucleoprotein H2; K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=449
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 16/195 (8%)
Query 68 IRLRGLPWDVNEDAIIRFLKPV-VDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
+++RGLPW + + ++RF + V R +GEA+V + + D +A++
Sbjct 13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPW 186
MG R++EVF+S++ + + ++ DG ++LRGLP+
Sbjct 73 KDR-ETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDG-----------FVRLRGLPF 120
Query 187 TCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLG 246
C+ ++V FF G EI + + L V GR G A+V+ A+ A +K H++ +G
Sbjct 121 GCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 177
Query 247 RRFVEVYPSTREEMQ 261
R++E++ S+R E++
Sbjct 178 HRYIEIFKSSRAEVR 192
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
V+K+RGLPW+C+ +V+ FF + + G V +GR +G A+VEL A
Sbjct 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query 238 EKLHRKYLGRRFVEVYPSTREEM 260
+K R+ +G R+VEV+ S EM
Sbjct 72 KK-DRETMGHRYVEVFKSNSVEM 93
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELP--DAATADAA 236
+ +RGLP+ T+ND+ NFF + V + + DGR+ G A VE + A A A
Sbjct 291 VHMRGLPYRATENDIYNFFS----PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA 346
Query 237 KEKLHRKYLGRRFVEVY 253
K+K + ++ R+VE++
Sbjct 347 KDKANMQH---RYVELF 360
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E+ I F P + + V + +G + RVTGEA V T + V
Sbjct 287 TGHCVHMRGLPYRATENDIYNFFSP---LNPMRVHIEIGPDGRVTGEADVEFATHE-DAV 342
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A M R++E+F +S
Sbjct 343 AAMAKDKANMQHRYVELFLNS 363
> xla:432071 hnrnph1-a, MGC78776, hnrnph, hnrnph2, hnrph, hnrph1;
heterogeneous nuclear ribonucleoprotein H1 (H); K12898 heterogeneous
nuclear ribonucleoprotein F/H
Length=441
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELD-VCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
+++RGLPW + D I F L V R +GEA+V T D +AV+
Sbjct 12 VKVRGLPWSCSHDEIENFFSESKIANGLSGVHFIYTREGRPSGEAFVEFETEDDLQLAVK 71
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPW 186
M R++EVF+S++ + + ++ DG ++LRGLP+
Sbjct 72 KDRA-TMAHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDG-----------FVRLRGLPF 119
Query 187 TCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLG 246
C+ ++V FF G EI + + L V GR G A+V+ A+ A +K H++ +G
Sbjct 120 GCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 176
Query 247 RRFVEVYPSTREEMQ 261
R++E++ S+R E++
Sbjct 177 HRYIEIFKSSRAEVR 191
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
V+K+RGLPW+C+ +++ NFF E G V +GR +G A+VE A
Sbjct 11 VVKVRGLPWSCSHDEIENFFSESKIANGLSGVHFIYTREGRPSGEAFVEFETEDDLQLAV 70
Query 238 EKLHRKYLGRRFVEVYPSTREEM 260
+K R + R+VEV+ S EM
Sbjct 71 KK-DRATMAHRYVEVFKSNSVEM 92
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E I F P+ V V + +G + RVTGEA V + + V
Sbjct 275 TGHCVHMRGLPYRATETDIYTFFSPLNPVR---VHIEIGADGRVTGEADVEFASHE-DAV 330
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A + M R++E+F +S
Sbjct 331 AAMSKDKANMQHRYVELFLNS 351
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query 161 SGTRDGRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMN 220
S R G + + + +RGLP+ T+ D+ FF + V + + DGR+
Sbjct 261 SDNRYGDGSTFQSTTGHCVHMRGLPYRATETDIYTFFS----PLNPVRVHIEIGADGRVT 316
Query 221 GIAYVELPDAATADAAKEKLHRKYLGRRFVEVY 253
G A VE A AA K + + R+VE++
Sbjct 317 GEADVEFASHEDAVAAMSK-DKANMQHRYVELF 348
> hsa:3188 HNRNPH2, FTP3, HNRPH', HNRPH2, hnRNPH'; heterogeneous
nuclear ribonucleoprotein H2 (H'); K12898 heterogeneous nuclear
ribonucleoprotein F/H
Length=449
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 99/195 (50%), Gaps = 16/195 (8%)
Query 68 IRLRGLPWDVNEDAIIRFLKPV-VDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
+++RGLPW + D ++RF + + R +GEA+V + + + +A++
Sbjct 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPW 186
MG R++EVF+S++ + + ++ DG ++LRGLP+
Sbjct 73 KDR-ETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDG-----------FVRLRGLPF 120
Query 187 TCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLG 246
C+ ++V FF G EI + + L V GR G A+V+ A+ A +K H++ +G
Sbjct 121 GCSKEEIVQFFS--GLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 177
Query 247 RRFVEVYPSTREEMQ 261
R++E++ S+R E++
Sbjct 178 HRYIEIFKSSRAEVR 192
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
V+K+RGLPW+C+ ++V+ FF + + G + +GR +G A+VEL A
Sbjct 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query 238 EKLHRKYLGRRFVEVYPSTREEM 260
+K R+ +G R+VEV+ S EM
Sbjct 72 KK-DRETMGHRYVEVFKSNSVEM 93
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELP--DAATADAA 236
+ +RGLP+ T+ND+ NFF + V + + DGR+ G A VE + A A A
Sbjct 291 VHMRGLPYRATENDIYNFFS----PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA 346
Query 237 KEKLHRKYLGRRFVEVY 253
K+K + ++ R+VE++
Sbjct 347 KDKANMQH---RYVELF 360
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E+ I F P + + V + +G + RVTGEA V T + V
Sbjct 287 TGHCVHMRGLPYRATENDIYNFFSP---LNPMRVHIEIGPDGRVTGEADVEFATHE-DAV 342
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A M R++E+F +S
Sbjct 343 AAMAKDKANMQHRYVELFLNS 363
> xla:446758 hnrnph1-b, MGC130700, MGC80081, hnrnph, hnrnph1,
hnrph, hnrph1, hnrph2; heterogeneous nuclear ribonucleoprotein
H1 (H); K12898 heterogeneous nuclear ribonucleoprotein F/H
Length=456
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 16/195 (8%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELD-VCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
+++RGLPW + D I F L + R +GEA+V T + + ++
Sbjct 12 VKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLGLK 71
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPW 186
MG R++EVF+S+ + + ++ DG ++LRGLP+
Sbjct 72 KDRA-TMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDG-----------FVRLRGLPF 119
Query 187 TCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLG 246
C+ ++V FF G EI + + L V GR G A+V+ A+ A +K H++ +G
Sbjct 120 GCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 176
Query 247 RRFVEVYPSTREEMQ 261
R++E++ S+R E++
Sbjct 177 HRYIEIFKSSRAEVR 191
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
V+K+RGLPW+C+ +++ NFF E G + +GR +G A+VE
Sbjct 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLGL 70
Query 238 EKLHRKYLGRRFVEVYPSTREEM 260
+K R +G R+VEV+ S EM
Sbjct 71 KK-DRATMGHRYVEVFKSNNVEM 92
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query 64 VGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDV 123
G + +RGLP+ E I F P+ V V + +G + RVTGEA V T + V
Sbjct 275 TGHCVHMRGLPYRATETDIYTFFSPLNPVR---VHIEIGADGRVTGEADVEFATHE-DAV 330
Query 124 AVRTLHGRMMGPRWIEVFRSS 144
A + M R++E+F +S
Sbjct 331 AAMSKDKANMQHRYVELFLNS 351
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query 161 SGTRDGRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMN 220
S +R G + + +RGLP+ T+ D+ FF + V + + DGR+
Sbjct 261 SDSRYGDGTSFQSTTGHCVHMRGLPYRATETDIYTFFS----PLNPVRVHIEIGADGRVT 316
Query 221 GIAYVELPDAATADAAKEKLHRKYLGRRFVEVY 253
G A VE A AA K + + R+VE++
Sbjct 317 GEADVEFATHEDAVAAMSK-DKANMQHRYVELF 348
> ath:AT5G66010 RNA binding / nucleic acid binding / nucleotide
binding
Length=255
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 110/213 (51%), Gaps = 29/213 (13%)
Query 60 GFAGVGTHIRLRGLPWDVNEDAIIRFLK--PVVDVTELDVCVCVGLNKRVTGEAYVNVHT 117
G+AG +RLRGLP++ + I F +VDV + V N + +GEA+V
Sbjct 43 GYAGGFPVVRLRGLPFNCADIDIFEFFAGLNIVDV------LLVSKNGKFSGEAFVVFAG 96
Query 118 TDMRDVAV-RTLHGRMMGPRWIEVFRSSAEDFERAM---------QRRVAVMNSG-TRDG 166
++A+ R H MG R++EVFR S +D+ A+ + R + +G +R
Sbjct 97 PMQVEIALQRDRHN--MGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAK 154
Query 167 RDADVKGLNLT-VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYV 225
R ++ + L T VLK+RGLP++ ++ FF G+++ V + DG+ G A+V
Sbjct 155 RFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFF--SGYKVIQGRVQVVCRPDGKATGEAFV 212
Query 226 ELP--DAATADAAKEKLHRKYLGRRFVEVYPST 256
E + A AK+K+ +G R+VE++P+T
Sbjct 213 EFETGEEARRAMAKDKMS---IGSRYVELFPTT 242
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query 176 LTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSV-VLGVAVDGRMNGIAYVELPDAATAD 234
V++LRGLP+ C D D+ FF G + V VL V+ +G+ +G A+V +
Sbjct 48 FPVVRLRGLPFNCADIDIFEFF------AGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVE 101
Query 235 AAKEKLHRKYLGRRFVEVYPSTREEMQRA 263
A ++ R +GRR+VEV+ ++++ A
Sbjct 102 IALQR-DRHNMGRRYVEVFRCSKQDYYNA 129
> cel:Y73B6BL.33 hypothetical protein; K12898 heterogeneous nuclear
ribonucleoprotein F/H
Length=610
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 27/202 (13%)
Query 67 HIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
+IRLRGLP++ E I F + E VC R GEAYV T+ A+
Sbjct 65 YIRLRGLPFNATEKDIHEFFAGLT--IERVKFVCT--TGRPNGEAYVEFKNTEEAGKAME 120
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPW 186
+ + R+IEVF A++ E + D D G V++LRG+PW
Sbjct 121 NDR-KEISNRYIEVFTVEADEAEFEFRP-------------DPDSNGEVNHVIRLRGVPW 166
Query 187 TCTDNDVVNFFQEHGFEIGFDSVVLG--VAVDGRMNGIAYVELPDAATADAAKEKL--HR 242
+C ++DV FF+ G E +V+G R +G A+V T DAA++ + +
Sbjct 167 SCKEDDVRKFFE--GLEPPPAEIVIGGTGGPRSRPSGEAFVRF---TTQDAAEKAMDYNN 221
Query 243 KYLGRRFVEVYPSTREEMQRAK 264
+++G R+VEV+ S+ E RAK
Sbjct 222 RHMGSRYVEVFMSSMVEFNRAK 243
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 64/244 (26%)
Query 68 IRLRGLPWDVNEDAIIRFLKPV-VDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
IRLRG+PW ED + +F + + E+ + G R +GEA+V T D + A+
Sbjct 159 IRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTTQDAAEKAM- 217
Query 127 TLHGRMMGPRWIEVFRSS---------------AEDFER--------------------- 150
+ R MG R++EVF SS + +ER
Sbjct 218 DYNNRHMGSRYVEVFMSSMVEFNRAKGGGSGEYSASYERTGIRPLMSVDSGYDHGRRGGG 277
Query 151 ------AMQRRVAVMNSGTRDGR---------------DADVKGLNLTVLKLRGLPWTCT 189
+ R N G+ GR D G + + +RGLP+
Sbjct 278 GRYGDSSYDRGYDDYNRGSYGGRRDYGYNGGHDQGGRSDYGRGGDDPLRVYMRGLPYDAD 337
Query 190 DNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRRF 249
D+ + FF + SV +G+ GR +G A E + A + +++ +GRR+
Sbjct 338 DHAIAAFFS----PLRCHSVKIGINETGRPSGDAIAEFDNYNDLQVALSRNNQR-MGRRY 392
Query 250 VEVY 253
VE++
Sbjct 393 VELF 396
> mmu:231413 Grsf1, B130010H02, BB232551, C80280, D5Wsu31e; G-rich
RNA sequence binding factor 1
Length=362
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 23/198 (11%)
Query 68 IRLRGLPWDVNEDAIIRFLKPV-VDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
IR +GLPW + ++ F + +E + + + + G+A + + + A+
Sbjct 34 IRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 93
Query 127 TLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPW 186
H MG R++EV+ + ED + M+ + DG V++LRGLP+
Sbjct 94 K-HRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDG-----------VVRLRGLPY 141
Query 187 TCTDNDVVNFFQEHGFEIGFDSVVLGVAVDG---RMNGIAYVELPDAATADAAKEKLHRK 243
+C + D+V+FF G + V + +D R G AYV+ + A+ A K HR+
Sbjct 142 SCNEKDIVDFF------AGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HRE 194
Query 244 YLGRRFVEVYPSTREEMQ 261
+G R++E++PS R E++
Sbjct 195 EIGNRYIEIFPSRRNEVR 212
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query 175 NLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATAD 234
++ +++ +GLPW+CT DV+NFF + + + + DG+ G A +E+
Sbjct 30 DVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQ 89
Query 235 AAKEKLHRKYLGRRFVEVYPSTREEM 260
A EK HR Y+G+R+VEVY E++
Sbjct 90 KALEK-HRMYMGQRYVEVYEINNEDV 114
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
+ +RGLP+ N II F P+ V + + + + TGEA +VH D
Sbjct 285 VHMRGLPFQANAQDIINFFAPLKPVR---ITMEYSSSGKATGEA--DVHFDTHEDAVAAM 339
Query 128 LHGR-MMGPRWIEVFRSS 144
L R + R+IE+F +S
Sbjct 340 LKDRSHVQHRYIELFLNS 357
> hsa:2926 GRSF1, FLJ13125; G-rich RNA sequence binding factor
1
Length=318
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 21/136 (15%)
Query 129 HGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPWTC 188
H MG R++EV+ + ED + A+ + + V +S +N V++LRGLP++C
Sbjct 51 HRMYMGQRYVEVYEINNEDVD-ALMKSLQVKSSPV----------VNDGVVRLRGLPYSC 99
Query 189 TDNDVVNFFQEHGFEIGFDSVVLGVAVDG---RMNGIAYVELPDAATADAAKEKLHRKYL 245
+ D+V+FF G + V + +D R G AYV+ + A+ A K HR+ +
Sbjct 100 NEKDIVDFF------AGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEI 152
Query 246 GRRFVEVYPSTREEMQ 261
G R++E++PS R E++
Sbjct 153 GNRYIEIFPSRRNEVR 168
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query 30 GLLLLKEHSINVEDPSS-GETLKPVGAPAANGFAGVGTHIRLRGLPWDVNEDAIIRFLK- 87
G ++ + IN ED + ++L+ +P N GV +RLRGLP+ NE I+ F
Sbjct 56 GQRYVEVYEINNEDVDALMKSLQVKSSPVVND--GV---VRLRGLPYSCNEKDIVDFFAG 110
Query 88 -PVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRTLHGRMMGPRWIEVFRS 143
+VD+T V +R TGEAYV +M + A+ H +G R+IE+F S
Sbjct 111 LNIVDIT----FVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYIEIFPS 162
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query 192 DVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRRFVE 251
DV+NFF + G + + + DG+ G A +E+ A EK HR Y+G+R+VE
Sbjct 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRYVE 61
Query 252 VYPSTREEM 260
VY E++
Sbjct 62 VYEINNEDV 70
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query 27 LSKGLLLLKEHSIN--VEDPSSGETLK--------PVGAPAANGFAGVGT--HIRLRGLP 74
+++ ++ +EH +N ++ ++ E+ K P P A F + + +RGLP
Sbjct 188 ITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLP 247
Query 75 WDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRTLHGR-MM 133
+ N II F P+ V + + + + TGEA +VH D L R +
Sbjct 248 FQANAQDIINFFAPLKPVR---ITMEYSSSGKATGEA--DVHFETHEDAVAAMLKDRSHV 302
Query 134 GPRWIEVFRSS 144
R+IE+F +S
Sbjct 303 HHRYIELFLNS 313
> xla:494658 hnrnph3, hnrph3; heterogeneous nuclear ribonucleoprotein
H3 (2H9); K12898 heterogeneous nuclear ribonucleoprotein
F/H
Length=342
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query 133 MGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPWTCTDND 192
MG R+IEVF+S+ + E V+ + D + D G ++LRGLP+ C+ +
Sbjct 1 MGHRYIEVFKSNNTEME-------WVLKHNSTDDVETDSDG----TVRLRGLPFGCSKEE 49
Query 193 VVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRRFVEV 252
+V FF G I + + L V GR G A+V+ A+ A K H++ +G R++E+
Sbjct 50 IVQFFS--GLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGK-HKERIGHRYIEI 106
Query 253 YPSTREEMQ 261
+ S+R E++
Sbjct 107 FKSSRGEIR 115
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
+RLRGLP+ +++ I++F + V + + V R TGEA+V + ++ + A+
Sbjct 36 VRLRGLPFGCSKEEIVQFFSGLRIVPN-GITLTVDYQGRSTGEAFVQFASKEIAENALGK 94
Query 128 LHGRMMGPRWIEVFRSS 144
H +G R+IE+F+SS
Sbjct 95 -HKERIGHRYIEIFKSS 110
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query 55 APAANGFAGV--GTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAY 112
A A +G AG G + +RGLP+ +E I F P +T + V + VG + R TGEA
Sbjct 198 AGAGDGSAGFHSGHFVHMRGLPFRASESDIANFFSP---LTPIRVHIDVGADGRATGEAD 254
Query 113 VNVHTTDMRDVAVRTLHGRMMGPRWIEVFRSS 144
V T + VA + M R+IE+F +S
Sbjct 255 VEFATHE-DAVAAMSKDKNNMQHRYIELFLNS 285
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
+ +RGLP+ +++D+ NFF + V + V DGR G A VE A AA
Sbjct 213 VHMRGLPFRASESDIANFFS----PLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMS 268
Query 239 KLHRKYLGRRFVEVY 253
K + + R++E++
Sbjct 269 K-DKNNMQHRYIELF 282
> dre:563249 grsf1, MGC153305, wu:fb62c04, zgc:153305; G-rich
RNA sequence binding factor 1
Length=301
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 106/230 (46%), Gaps = 24/230 (10%)
Query 33 LLKEHSINVEDPSSGETLKPVGAPAANGFAGVGTH---IRLRGLPWDVNEDAIIRFLKPV 89
+ + S+ E PS + P+ ++ +GLPW + I+ F
Sbjct 1 MFSQRSLCSEAPSKDDEYPPLPEYTPGSEENQAKELFIVQAKGLPWSCTAEDIMSFFSEC 60
Query 90 VDVTELD-VCVCVGLNKRVTGEAYVNV-HTTDMRDVAVRTLHGRMMGPRWIEVFRSSAED 147
++ V + + +G+A++ + H D+ + H R IEV + +D
Sbjct 61 RIRGGVNGVHILYNKYGKPSGQAFIELEHEEDVGKALDQ--HRHYPRDRLIEVREVTNKD 118
Query 148 FERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFD 207
E ++ +++ + D TV++LRGLP++CT+ D++ FF G ++ D
Sbjct 119 AEAILK--------ASKERVETD------TVVRLRGLPYSCTEGDIIRFFS--GLDVVED 162
Query 208 SVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRRFVEVYPSTR 257
V + + G+ +G A+VE A A+ A +K R+ LG R++E++P+ +
Sbjct 163 GVTIILNRRGKSSGDAFVEFATKAMAEKALKK-DREILGNRYIEIFPAMK 211
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query 66 THIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
T +RLRGLP+ E IIRF +DV E V + + + +G+A+V T M + A+
Sbjct 134 TVVRLRGLPYSCTEGDIIRFFS-GLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKAL 192
Query 126 RTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGR-------DADVKGLNLT- 177
+ ++G R+IE+F AM+ + N ++ R D ++ +T
Sbjct 193 KK-DREILGNRYIEIF--------PAMKSAIPSQNRSWQNDRVFTPRAEDPPLRNTAVTK 243
Query 178 -VLKLRGLPWTCTDNDVVNFF 197
V+ +RGLP+ D+V FF
Sbjct 244 NVIHMRGLPFDAKAEDIVKFF 264
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query 176 LTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADA 235
L +++ +GLPW+CT D+++FF E G + V + G+ +G A++EL
Sbjct 36 LFIVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYNKYGKPSGQAFIELEHEEDVGK 95
Query 236 AKEKLHRKYLGRRFVEVYPSTREEMQ 261
A ++ HR Y R +EV T ++ +
Sbjct 96 ALDQ-HRHYPRDRLIEVREVTNKDAE 120
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTG--EAYVNVH 116
I +RGLP+D + I++F P V + V V G + TG EAY H
Sbjct 246 IHMRGLPFDAKAEDIVKFFAP---VRLMKVVVEFGPEGKPTGEAEAYFKTH 293
> mmu:432467 Hnrnph3, AA693301, AI666703, Hnrph3; heterogeneous
nuclear ribonucleoprotein H3; K12898 heterogeneous nuclear
ribonucleoprotein F/H
Length=346
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
++LRGLP+ C+ ++V FFQ G EI + + L + GR G A+V+ A+ A
Sbjct 17 TVRLRGLPFGCSKEEIVQFFQ--GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENAL 74
Query 238 EKLHRKYLGRRFVEVYPSTREEMQ 261
K H++ +G R++E++ S+R E++
Sbjct 75 GK-HKERIGHRYIEIFRSSRSEIK 97
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
+RLRGLP+ +++ I++F + +++ + + + R TGEA+V + ++ + A+
Sbjct 18 VRLRGLPFGCSKEEIVQFFQ-GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENAL-G 75
Query 128 LHGRMMGPRWIEVFRSS 144
H +G R+IE+FRSS
Sbjct 76 KHKERIGHRYIEIFRSS 92
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query 57 AANGFAGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVH 116
A++GF G G + +RGLP+ E+ I F P + + V + +G + R TGEA V
Sbjct 187 ASSGFHG-GHFVHMRGLPFRATENDIANFFSP---LNPIRVHIDIGADGRATGEADVEF- 241
Query 117 TTDMRDVAVRTLHGRMMGPRWIEVFRSSA 145
T VA + M R+IE+F +S
Sbjct 242 VTHEDAVAAMSKDKNNMQHRYIELFLNST 270
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
+ +RGLP+ T+ND+ NFF + V + + DGR G A VE A AA
Sbjct 196 FVHMRGLPFRATENDIANFFS----PLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAM 251
Query 238 EKLHRKYLGRRFVEVY 253
K + + R++E++
Sbjct 252 SK-DKNNMQHRYIELF 266
> hsa:3189 HNRNPH3, 2H9, FLJ34092, HNRPH3; heterogeneous nuclear
ribonucleoprotein H3 (2H9); K12898 heterogeneous nuclear
ribonucleoprotein F/H
Length=346
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
++LRGLP+ C+ ++V FFQ G EI + + L + GR G A+V+ A+ A
Sbjct 17 TVRLRGLPFGCSKEEIVQFFQ--GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENAL 74
Query 238 EKLHRKYLGRRFVEVYPSTREEMQ 261
K H++ +G R++E++ S+R E++
Sbjct 75 GK-HKERIGHRYIEIFRSSRSEIK 97
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
+RLRGLP+ +++ I++F + +++ + + + R TGEA+V + ++ + A+
Sbjct 18 VRLRGLPFGCSKEEIVQFFQ-GLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENAL-G 75
Query 128 LHGRMMGPRWIEVFRSS 144
H +G R+IE+FRSS
Sbjct 76 KHKERIGHRYIEIFRSS 92
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query 57 AANGFAGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVH 116
A++GF G G + +RGLP+ E+ I F P + + V + +G + R TGEA V
Sbjct 187 ASSGFHG-GHFVHMRGLPFRATENDIANFFSP---LNPIRVHIDIGADGRATGEADVEF- 241
Query 117 TTDMRDVAVRTLHGRMMGPRWIEVFRSSA 145
T VA + M R+IE+F +S
Sbjct 242 VTHEDAVAAMSKDKNNMQHRYIELFLNST 270
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAK 237
+ +RGLP+ T+ND+ NFF + V + + DGR G A VE A AA
Sbjct 196 FVHMRGLPFRATENDIANFFS----PLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAM 251
Query 238 EKLHRKYLGRRFVEVY 253
K + + R++E++
Sbjct 252 SK-DKNNMQHRYIELF 266
> dre:387255 rbm19, npo; RNA binding motif protein 19; K14787
multiple RNA-binding domain-containing protein 1
Length=926
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query 42 EDPSSGETLKPVGAPAANGFAGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCV 101
E SS ++ +P P ++LRG P++V E + F+ P+ V +
Sbjct 271 EKTSSQKSTRPAIEPTTE------FTVKLRGAPFNVKEQQVKEFMMPLKPVA---IRFAK 321
Query 102 GLNKRVTGEAYVNVHTTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNS 161
+ R +G YV++ + + A+R L MG R+IEVFR++ +R +R + +
Sbjct 322 NSDGRNSGYVYVDLRSEAEVERALR-LDKDYMGGRYIEVFRANNFKNDRRSSKRSEMEKN 380
Query 162 GTRDGRDADVKGLNLTV--LKLRGLPWTCTDNDVVNFFQEHG 201
R+ +D + + L +R +P+TCT+ D+ F +HG
Sbjct 381 FVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKEVFSKHG 422
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query 178 VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVA--VDGRMNGIAYVELPDAATADA 235
+KLRG P+ + V F + V + A DGR +G YV+L A +
Sbjct 290 TVKLRGAPFNVKEQQVKEFM------MPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVER 343
Query 236 AKEKLHRKYLGRRFVEVY----------PSTREEMQR 262
A +L + Y+G R++EV+ S R EM++
Sbjct 344 AL-RLDKDYMGGRYIEVFRANNFKNDRRSSKRSEMEK 379
> xla:379683 rbm12, MGC68861, SWAN; RNA binding motif protein
12
Length=877
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 58/218 (26%), Positives = 102/218 (46%), Gaps = 28/218 (12%)
Query 55 APAANGFAGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVN 114
+P +GF + L+GLP++ +I F K + ++ E + + G N + TGE ++
Sbjct 424 SPHEHGFC-----VYLKGLPYEAENKHVIDFFKKL-NIVEDSIYIAYGSNGKATGEGFLE 477
Query 115 V-HTTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTR-----DGRD 168
+ D + R H + MG R+++V + ++AM ++ +++ + + +D
Sbjct 478 FRNEEDYKSALCR--HKQYMGNRFVQVHPIT----KKAMLEKIDMIHKKMQSYNYGEHKD 531
Query 169 A------DVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGI 222
A D G L L LP++ D+ +FF GF I + V L +G+ G
Sbjct 532 APLDAEFDKHGPRLWG-HLSNLPYSIMRKDISHFFISEGFAIDENFVQLLTDNNGQCIGQ 590
Query 223 AYVELPDAATADAAK-EKLHRKYLGRRFVEVYPSTREE 259
A V+ + DA K E+LHRK L R V ++ EE
Sbjct 591 ALVQF--RSEDDARKSERLHRKKLNGRDVFLHIVNAEE 626
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query 181 LRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKL 240
L+GLP+ + V++FF++ I DS+ + +G+ G ++E + +A +
Sbjct 434 LKGLPYEAENKHVIDFFKK--LNIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCR- 490
Query 241 HRKYLGRRFVEVYPSTREEM 260
H++Y+G RFV+V+P T++ M
Sbjct 491 HKQYMGNRFVQVHPITKKAM 510
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query 181 LRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVEL-PDAATADAAKEK 239
L GLP ++ D+ F HG I D +V+ GR NG A V+L T +A K
Sbjct 308 LHGLPLPVSEADIKELF--HGLRI--DGIVILTDPMGRHNGSALVKLITPHDTFEALKR- 362
Query 240 LHRKYLGRRFVEVYPSTREE 259
+R +G+RF+EV P+T +
Sbjct 363 -NRMLMGQRFIEVSPATERQ 381
Score = 35.0 bits (79), Expect = 0.29, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query 177 TVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAA 236
TV++++ +P+T T +++++FF +G+++ SV L + G G A V A AA
Sbjct 801 TVIRVQNMPFTVTVDEILDFF--YGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAA 858
Query 237 KEKLHRKYLGRRFVEV 252
L+ + +G R V++
Sbjct 859 VVDLNERPIGSRKVKL 874
> hsa:10137 RBM12, HRIHFB2091, KIAA0765, SWAN; RNA binding motif
protein 12
Length=932
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 19/223 (8%)
Query 46 SGETLKPVGAPAANGFAGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNK 105
SG+ +P GF + L+GLP++ +I F K + D+ E + + G N
Sbjct 415 SGQKRSRSRSPHEAGFC-----VYLKGLPFEAENKHVIDFFKKL-DIVEDSIYIAYGPNG 468
Query 106 RVTGEAYVNV-HTTDMRDVAVRTLHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTR 164
+ TGE +V + D + R H + MG R+I+V + + + + + +
Sbjct 469 KATGEGFVEFRNEADYKAALCR--HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSY 526
Query 165 DGRD------ADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGR 218
D R+ DV + + +P++ T DV+ F + G + ++V + V +G+
Sbjct 527 DQREMILNPEGDVNSAKVCA-HITNIPFSITKMDVLQFLE--GIPVDENAVHVLVDNNGQ 583
Query 219 MNGIAYVELPDAATADAAKEKLHRKYLGRRFVEVYPSTREEMQ 261
G A V+ + A + E+LHRK L R V+ T E+M+
Sbjct 584 GLGQALVQFKNEDDARKS-ERLHRKKLNGREAFVHVVTLEDMR 625
Score = 37.0 bits (84), Expect = 0.071, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVE-LPDAATADAAK 237
+ + G+P++ +NDV +FF HG + D+V L GR NG V+ L T +A K
Sbjct 306 VSVHGMPFSAMENDVRDFF--HGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 361
Query 238 EKLHRKYLGRRFVEVYPSTREE 259
+R + +R+VEV P+T +
Sbjct 362 R--NRMLMIQRYVEVSPATERQ 381
Score = 33.9 bits (76), Expect = 0.65, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query 177 TVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAA 236
TV+K++ +P+T + +++++FF +G+++ SV L G G A V A AA
Sbjct 856 TVIKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 913
Query 237 KEKLHRKYLGRRFVEV 252
L+ + +G R V++
Sbjct 914 VIDLNDRPIGSRKVKL 929
> mmu:75710 Rbm12, 5730420G12Rik, 9430070C08Rik, AI852903, MGC30712,
MGC38279, SWAN, mKIAA0765; RNA binding motif protein
12
Length=992
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 35/231 (15%)
Query 46 SGETLKPVGAPAANGFAGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNK 105
SG+ +P GF + L+GLP++ +I F K + D+ E + + G N
Sbjct 415 SGQKRSRSRSPHEAGFC-----VYLKGLPFEAENKHVIDFFKKL-DIVEDSIYIAYGPNG 468
Query 106 RVTGEAYVNVHTTDMRDVAVRTLHGRMMGPRWIEV--------------FRSSAEDFERA 151
+ TGE +V D A H + MG R+I+V R ++F +
Sbjct 469 KATGEGFVEFRN-DADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNF--S 525
Query 152 MQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVL 211
+R V+N +G + K + +P++ T DV+ F + I D +
Sbjct 526 YDQRELVLNP---EGEVSSAK----VCAHITNIPFSITKMDVLQFLEG----IPVDESAV 574
Query 212 GVAVDGRMNGIAYVELPDAATADAAK-EKLHRKYLGRRFVEVYPSTREEMQ 261
V VD G+ + DA K E LHRK L R V+ T E+M+
Sbjct 575 HVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMR 625
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVE-LPDAATADAAK 237
+ + G+P++ +NDV FF HG + D+V L GR NG V+ L T +A K
Sbjct 306 VSVHGMPFSAMENDVREFF--HGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 361
Query 238 EKLHRKYLGRRFVEVYPSTREE 259
+R + +R+VEV P+T +
Sbjct 362 R--NRMLMIQRYVEVSPATERQ 381
Score = 33.1 bits (74), Expect = 0.95, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query 177 TVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAA 236
T++K++ +P+T + +++++FF +G+++ SV L G G A V A AA
Sbjct 916 TIIKVQNMPFTVSIDEILDFF--YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 973
Query 237 KEKLHRKYLGRRFVEV 252
L+ + +G R V++
Sbjct 974 VIDLNDRPIGSRKVKL 989
> pfa:PF10_0235 RNA binding protein, putative
Length=160
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 0/80 (0%)
Query 174 LNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATA 233
+NL LKLRGLP+ ++ ++ NFF++ + + + + G AYV D A
Sbjct 52 INLPRLKLRGLPFDASEEEIKNFFRDFQLTKQAYPIHIIKGIKNKPTGHAYVYFDDEEEA 111
Query 234 DAAKEKLHRKYLGRRFVEVY 253
A + ++RKY+ RFVE+Y
Sbjct 112 RNACQAMNRKYIRDRFVEIY 131
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTE-LDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVR 126
++LRGLP+D +E+ I F + + + + G+ + TG AYV + A +
Sbjct 57 LKLRGLPFDASEEEIKNFFRDFQLTKQAYPIHIIKGIKNKPTGHAYVYFDDEEEARNACQ 116
Query 127 TLHGRMMGPRWIEVFR 142
++ + + R++E+++
Sbjct 117 AMNRKYIRDRFVEIYQ 132
> cel:W02D3.11 hrpf-1; HnRNP F homolog family member (hrpf-1)
Length=549
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
++ RGLPW+ E + F ++ N R +G+A V + + A++
Sbjct 7 VQCRGLPWEATEQELRDFFG----NNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKK 62
Query 128 LHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRD-------------ADVKGL 174
+G R+IEVF + A RR G R RD +D G
Sbjct 63 DR-EHLGSRYIEVFPAGG-----APTRRGDRGERGDRGDRDHYRSRGAPPRDRYSDRGGP 116
Query 175 NLT----VLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDA 230
+ +++LRGLP++ T D+ +F I D ++L R G AYV
Sbjct 117 RSSGPDSIVRLRGLPFSVTSRDISDFLAP--LPIVRDGILLPDQQRARPGGEAYVCFETM 174
Query 231 ATADAAKEKLHRKYLGRRFVEVYPSTREEMQR 262
+ AK++ H K +G R++EV+ +T ++ R
Sbjct 175 ESVQIAKQR-HMKNIGHRYIEVFEATHRDLSR 205
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query 62 AGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMR 121
+G + +RLRGLP+ V I FL P+ V + + + R GEAYV T +
Sbjct 119 SGPDSIVRLRGLPFSVTSRDISDFLAPLPIVRD-GILLPDQQRARPGGEAYVCFETMESV 177
Query 122 DVAVRTLHGRMMGPRWIEVFRSSAEDFER 150
+A + H + +G R+IEVF ++ D R
Sbjct 178 QIA-KQRHMKNIGHRYIEVFEATHRDLSR 205
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query 178 VLKLRGLPWTCTDNDVVNFF---QEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATAD 234
VL++RG+P+ ++ DV +FF + + E+ D + D R+ + DA D
Sbjct 472 VLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQRPSGDARVIFYNRKDYDDALMKD 531
Query 235 AAKEKLHRKYLGRRFVEVYP 254
++Y+G R++E+ P
Sbjct 532 -------KQYMGERYIEMIP 544
> dre:445379 rbm12, zgc:193560, zgc:193570; RNA binding motif
protein 12
Length=876
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query 67 HIRLRGLPWDVNEDAI-----------IRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNV 115
++ L GLP+ V E I IR LK + R +G A V
Sbjct 303 YVHLHGLPFSVLEHEIRDFFHGLGIESIRLLKDNLG--------------RNSGRALVKF 348
Query 116 HTTDMRDVAVRTLHGRMMGPRWIEV-------FRSS------AEDFERAMQRRVAVMNSG 162
++ A++ G M+G R+IEV +R S D E RR + +
Sbjct 349 YSPHESFEALKRNAG-MIGQRYIEVSPATERQWRESVGHSKAGGDSEHNRHRRRSANSPT 407
Query 163 TRDGRDADVKG---LNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRM 219
G A + L+ V L+GLP+ + + FF+ +I DS+ + +GR
Sbjct 408 PSSGERARSRSPHKLDYCVY-LKGLPYEAENKQIFEFFKN--LDIVEDSIYIAYGPNGRA 464
Query 220 NGIAYVELPDAATADAAKEKLHRKYLGRRFVEVYPSTREEM 260
G +VE + AA H +Y+G RF++V+P T++ M
Sbjct 465 TGEGFVEFRNEMDYKAAL-GCHMQYMGSRFIQVHPITKKNM 504
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query 177 TVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAA 236
T++K++ +P+T T +++++FF +G+++ SV L + G G A V A AA
Sbjct 800 TIVKIQNMPFTVTVDEIIDFF--YGYQVLPGSVCLQFSDKGLPTGEAMVAFDSHDEAMAA 857
Query 237 KEKLHRKYLGRRFVEV 252
L+ + +G R V++
Sbjct 858 VMDLNDRPIGARKVKI 873
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
+ L GLP++ ++++ +FF HG +G +S+ L GR +G A V+ + + E
Sbjct 304 VHLHGLPFSVLEHEIRDFF--HG--LGIESIRLLKDNLGRNSGRALVKF---YSPHESFE 356
Query 239 KLHRK--YLGRRFVEVYPSTREEMQRA 263
L R +G+R++EV P+T + + +
Sbjct 357 ALKRNAGMIGQRYIEVSPATERQWRES 383
> xla:494769 rbm19; RNA binding motif protein 19; K14787 multiple
RNA-binding domain-containing protein 1
Length=920
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 18/204 (8%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
++LRG P++V E + FL P+ V + + TG +V++ + + A++
Sbjct 281 VKLRGAPFNVTEQNVKEFLVPLKPVA---IRIARNTYGNKTGYVFVDLSSEEEVQKALKR 337
Query 128 LHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLT-VLKLRGLPW 186
+ MG R+IEVFR + ++Q + RD ++ + L+ + L +R LP+
Sbjct 338 -NKDYMGGRYIEVFRDNYTK-SPSVQSKAESRPWEQRDKQELQQEDLSESGRLFVRNLPY 395
Query 187 TCTDNDVVNFFQEHG--FEIGF--DSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHR 242
+CT++D+ F ++G EI F DS+ + G A+V A A ++
Sbjct 396 SCTEDDLDKLFSKYGPISEIHFPIDSLT------KKPKGFAFVTFLITEHAVKAYAEVDG 449
Query 243 KYLGRRFVEVYPST--REEMQRAK 264
+ R + V PS +EE+ ++
Sbjct 450 QIFQGRLLHVLPSAAKKEEVNESE 473
> mmu:77604 C430048L16Rik, AV299215, MGC91091, Rbm12bb; RIKEN
cDNA C430048L16 gene
Length=834
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
L LRGLP+ ++DV FF + D V+L DGR NG A V+ A+ DA+
Sbjct 156 LFLRGLPYLVNEDDVRVFFSG----LCVDGVILLKHHDGRNNGDAIVKF--ASCVDASGG 209
Query 239 -KLHRKYLGRRFVEVYPSTREE 259
K HR ++G RF+EV + ++
Sbjct 210 LKCHRSFMGSRFIEVMQGSEQQ 231
> mmu:72397 Rbm12b, 3000004N20Rik, Rbm12ba; RNA binding motif
protein 12B
Length=836
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
L LRGLP+ ++DV FF + D V+L DGR NG A V+ A+ DA+
Sbjct 156 LFLRGLPYLVNEDDVRVFFSG----LCVDGVILLKHHDGRNNGDAIVKF--ASCVDASGG 209
Query 239 -KLHRKYLGRRFVEVYPSTREE 259
K HR ++G RF+EV + ++
Sbjct 210 LKCHRSFMGSRFIEVMQGSEQQ 231
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
+K+ LP+ +++++FF HG+++ DSV L G G A V + + A AA +
Sbjct 762 VKISNLPFKANASEILDFF--HGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 819
Query 239 KLHRKYLGRRFVEV 252
L + +G R V++
Sbjct 820 DLSGRPVGPRKVKL 833
> xla:379184 MGC132368; hypothetical protein MGC53694
Length=658
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query 181 LRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKL 240
L GLP+T ++DV FF HGF++ + + V +G +G AYV+ AT AK L
Sbjct 156 LNGLPYTADEHDVKEFF--HGFDV--EDINFCVRQNGDKDGKAYVKF---ATFQDAKASL 208
Query 241 --HRKYLGRRFV 250
H++Y+G R++
Sbjct 209 SRHKEYIGHRYI 220
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query 134 GPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNL--TVLKLRGLPWTCTDN 191
G R E RS + R + N D V +L ++L +P+T T
Sbjct 539 GRRSTERLRSPYNMNQNEQYERFHMGNQNVTDYESGPVNRPSLGGASIRLENVPYTATIE 598
Query 192 DVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRRFVE 251
++++FF HG+ + DSV + D G A V + + A AA +L+ + +G R V
Sbjct 599 EILDFF--HGYNVVPDSVKM----DYNSKGTAIVHMENYYEAAAAINELNERPIGPRKVH 652
Query 252 V 252
+
Sbjct 653 M 653
> hsa:389677 RBM12B, MGC:33837; RNA binding motif protein 12B
Length=1001
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query 179 LKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKE 238
L LRGLP+ ++DV FF + D V+ DGR NG A V+ A+ DA+
Sbjct 157 LFLRGLPYLVNEDDVRVFFSG----LCVDGVIFLKHHDGRNNGDAIVKF--ASCVDASGG 210
Query 239 -KLHRKYLGRRFVEVYPSTREE 259
K HR ++G RF+EV + ++
Sbjct 211 LKCHRSFMGSRFIEVMQGSEQQ 232
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query 176 LTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADA 235
+T +K+ LP+ N++++FF HG+ I DSV + G G A V + + A A
Sbjct 924 VTPIKIMNLPFKANVNEILDFF--HGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMA 981
Query 236 AKEKLHRKYLGRRFVEV 252
A + L+ + +G R V++
Sbjct 982 AIKDLNDRPVGPRKVKL 998
> mmu:74111 Rbm19, 1200009A02Rik, AV302714, KIAA0682, NPO; RNA
binding motif protein 19; K14787 multiple RNA-binding domain-containing
protein 1
Length=952
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 16/202 (7%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
++LRG P++V E +I FL P+ V + + + TG +V++ + + A++
Sbjct 295 VKLRGAPFNVTEKNVIEFLAPLKPVA---IRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 351
Query 128 LHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGLPWT 187
+ MG R+IEVFR R + T + + + L +R L +T
Sbjct 352 -NRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYT 410
Query 188 CTDNDVVNFFQEHG----FEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRK 243
++ D+ F +G DS+ + G A+V A A ++ +
Sbjct 411 SSEEDLEKLFSAYGPLSELHYPIDSLT------KKPKGFAFVTFMFPEHAVKAYAEVDGQ 464
Query 244 YLGRRFVEVYPST--REEMQRA 263
R + V PST +E Q A
Sbjct 465 VFQGRMLHVLPSTIKKEASQEA 486
> hsa:9904 RBM19, DKFZp586F1023, KIAA0682; RNA binding motif protein
19; K14787 multiple RNA-binding domain-containing protein
1
Length=960
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query 68 IRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRT 127
++LRG P++V E ++ FL P+ V + + + TG +V+ + A++
Sbjct 296 VKLRGAPFNVTEKNVMEFLAPLKPVA---IRIVRNAHGNKTGYIFVDFSNEEEVKQALKC 352
Query 128 LHGRMMGPRWIEVFRSSAEDFERAMQRRVAVMNSGTRDGRDADVKGLNLT-VLKLRGLPW 186
+ MG R+IEVFR + + G G + + + L + L +R LP+
Sbjct 353 -NREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPY 411
Query 187 TCTDNDVVNFFQEHG----FEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHR 242
T T+ D+ F ++G DS+ + G A++ A A ++
Sbjct 412 TSTEEDLEKLFSKYGPLSELHYPIDSLT------KKPKGFAFITFMFPEHAVKAYSEVDG 465
Query 243 KYLGRRFVEVYPST 256
+ R + V PST
Sbjct 466 QVFQGRMLHVLPST 479
> bbo:BBOV_III001020 17.m07117; hypothetical protein
Length=837
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query 56 PAANGFAGVGTHIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNV 115
P+ G + L+GLP+D E I+ +L + +DV + TG+AYV
Sbjct 133 PSDPGDPSYDALLYLKGLPYDCVESDILDWLS---SYSIVDVILIKNEEGCFTGDAYVRC 189
Query 116 HTTDMRDVAVRTLHGRMMGPRWIEVFR 142
T RD R + G+ +G R+I ++R
Sbjct 190 STLSERDRVHREMSGKYLGLRYIPIYR 216
> ath:AT1G71770 PAB5; PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding
/ poly(A) binding / translation initiation factor
Length=668
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 13/199 (6%)
Query 66 THIRLRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAV 125
T++ ++ LP ++ +D + + D++ V N R G +VN + + VAV
Sbjct 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFG--FVNFVSPEAAAVAV 282
Query 126 RTLHGRMMGPRWIEVFRSSAE-DFERAMQRRVAVMNSGTRDGRDADVKGLNLTVLKLRGL 184
++G +G + V R+ + D E ++R+ R R ++G NL L+ L
Sbjct 283 EKMNGISLGEDVLYVGRAQKKSDREEELRRKF----EQERISRFEKLQGSNLY---LKNL 335
Query 185 PWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKY 244
+ D + F E+G S + + G G +V + A A ++++ K
Sbjct 336 DDSVNDEKLKEMFSEYG---NVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKM 392
Query 245 LGRRFVEVYPSTREEMQRA 263
+GR+ + V + R+E ++A
Sbjct 393 IGRKPLYVALAQRKEERQA 411
> dre:100330634 RNA binding motif protein 12-like
Length=675
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query 164 RDGRDADVKGLNLTVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIA 223
R RD D LKL G+P++ T ++V NFF G ++ D ++ G +G +
Sbjct 143 RRQRDGDAPERAEVYLKLTGMPFSATKDNVHNFFA--GLKV--DDILFLKNPRGMFSGNS 198
Query 224 YVELPDAATADAAKEKLH--RKYLGRRFVEVYPSTREE 259
V T + A E L R+Y+G R++++ T EE
Sbjct 199 MVRF---TTKEDAIEGLKRDRQYMGSRYIQITRCTEEE 233
> tpv:TP03_0737 hypothetical protein
Length=968
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query 70 LRGLPWDVNEDAIIRFLKPVVDVTELDVCVCVGLNKRVTGEAYVNVHTTDMRDVAVRTLH 129
L+G+P+ E + +LK + + V N TG+AYV +RD + +
Sbjct 183 LKGIPFKATEKDVFDWLK---NYDIVSVIFIKNENGFFTGDAYVRCVNIQVRDKVAKEME 239
Query 130 GRMMGPRWIEVFRSSAEDF 148
+ +G R+I+VFR S +
Sbjct 240 NKRIGARYIQVFRVSENAY 258
Score = 37.0 bits (84), Expect = 0.066, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query 121 RDVAVRTLHGRMMGPRWIEVFRSSAEDFER-AMQRRVAVMNSGTRDGRDADVKGLNL--- 176
+++A + + R M V + ++ED A+Q+ + + +R + G+
Sbjct 118 QNIAKKKMAKRTMRKMVEAVTKETSEDHRNLAIQKFIGDLQYVSRRKKLPTPPGIYSPSY 177
Query 177 -TVLKLRGLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADA 235
+L L+G+P+ T+ DV ++ + + SV+ +G G AYV + D
Sbjct 178 DALLYLKGIPFKATEKDVFDWLKNYDIV----SVIFIKNENGFFTGDAYVRCVNIQVRDK 233
Query 236 AKEKLHRKYLGRRFVEVY 253
+++ K +G R+++V+
Sbjct 234 VAKEMENKRIGARYIQVF 251
> tgo:TGME49_094810 RRM domain-containing protein
Length=199
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query 192 DVVNFFQEHGFEIGF---DSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHRKYLGRR 248
D+ NFF+ G+ + +++ L +DGR G A V A AK+ HR YL R
Sbjct 107 DIANFFE--GYSLAGPPDEAIQLHRRMDGRPTGWASVYFESEQEARRAKQDKHRSYLHGR 164
Query 249 FVEVY 253
++E++
Sbjct 165 YIEIF 169
> xla:398766 rbm12b, MGC68792; RNA binding motif protein 12B
Length=654
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query 183 GLPWTCTDNDVVNFFQEHGFEIGFDSVVLGVAVDGRMNGIAYVELPDAATADAAKEKLHR 242
GLP++ ++ DV +FF HGF + V V +G +G AYV+ A+ AK L R
Sbjct 163 GLPYSTSELDVKDFF--HGFHVV--DVHFSVRSNGARDGNAYVKF---ASVQDAKASLSR 215
Query 243 --KYLGRRFVEVYPST 256
+Y+G R + V ST
Sbjct 216 DYEYIGHRRIAVKLST 231
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 9852431512
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40