bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_0334_orf1
Length=148
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_015130 adaptor-related protein complex 3, sigma 2 s... 213 2e-55
pfa:PFL2425w adaptor-related protein complex 3, sigma 2 subuni... 168 5e-42
cel:Y48G8AL.14 aps-3; AdaPtin, Small chain (clathrin associate... 160 2e-39
ath:AT3G50860 clathrin adaptor complex small chain family prot... 157 1e-38
xla:496244 ap3s2; adaptor-related protein complex 3, sigma 2 s... 154 8e-38
mmu:11778 Ap3s2, [s]3B; adaptor-related protein complex 3, sig... 152 3e-37
hsa:10239 AP3S2, AP3S3, FLJ35955, sigma3b; adaptor-related pro... 152 3e-37
dre:436812 ap3s2, zgc:92795; adaptor-related protein complex 3... 152 5e-37
dre:100334392 adaptor-related protein complex 3, sigma 2 subun... 152 5e-37
dre:449791 ap3s1, wu:fa92f10, zgc:101869; adaptor-related prot... 146 3e-35
mmu:11777 Ap3s1, MGC117528, [s]3A; adaptor-related protein com... 145 4e-35
hsa:1176 AP3S1, CLAPS3, Sigma3A; adaptor-related protein compl... 145 4e-35
xla:379829 ap3s1, MGC52794; adaptor-related protein complex 3,... 145 6e-35
hsa:100526783 C15orf38-AP3S2, FLJ20488; C15orf38-AP3S2 readthr... 127 2e-29
sce:YJL024C APS3, YKS7; Aps3p 104 1e-22
ath:AT2G19790 clathrin adaptor complex small chain family prot... 95.1 8e-20
tgo:TGME49_114420 AP-4 complex subunit sigma-1, putative ; K12... 93.2 3e-19
xla:734760 ap4s1, MGC130903; adaptor-related protein complex 4... 88.2 9e-18
mmu:11769 Ap1s1, AP19; adaptor protein complex AP-1, sigma 1; ... 87.8 1e-17
hsa:1174 AP1S1, AP19, CLAPS1, FLJ92436, SIGMA1A, WUGSC:H_DJ074... 87.8 1e-17
bbo:BBOV_IV010980 23.m06517; clathrin assembly protein small s... 87.0 2e-17
xla:399079 ap1s1, ap19, claps1, sigma1a; adaptor-related prote... 87.0 2e-17
ath:AT4G35410 clathrin adaptor complex small chain family protein 86.7 2e-17
ath:AT2G17380 AP19; AP19; protein binding / protein transporter 86.7 2e-17
cel:F29G9.3 aps-1; AdaPtin, Small chain (clathrin associated c... 86.7 3e-17
dre:327237 ap1s2, wu:fb94g06, wu:fd19a08, zgc:65824, zgc:77925... 86.3 3e-17
tgo:TGME49_113450 clathrin coat assembly protein AP17, putativ... 86.3 3e-17
xla:443609 ap1s3; adaptor-related protein complex 1, sigma 3 s... 85.9 4e-17
tpv:TP01_0754 clathrin assembly protein 85.9 4e-17
mmu:108012 Ap1s2, 1500012A13Rik, AI853648, EST1; adaptor-relat... 85.9 4e-17
tpv:TP01_0763 clathrin assembly protein; K12403 AP-4 complex s... 85.9 4e-17
xla:495185 ap1s2; adaptor-related protein complex 1, sigma 2 s... 85.9 5e-17
hsa:8905 AP1S2, MGC:1902, MRX59, SIGMA1B; adaptor-related prot... 85.5 5e-17
pfa:PF11_0187 clathrin assembly protein AP19, putative 85.5 6e-17
cpv:cgd8_4900 clathrin assembly protein ; K12403 AP-4 complex ... 85.1 8e-17
dre:447897 ap1s3b, zgc:101676; adaptor-related protein complex... 84.0 1e-16
tgo:TGME49_070370 clathrin-associated adaptor complex small ch... 84.0 1e-16
mmu:11782 Ap4s1, AI314282; adaptor-related protein complex AP-... 84.0 2e-16
ath:AT1G47830 clathrin coat assembly protein, putative; K11827... 84.0 2e-16
cpv:cgd8_4040 Aps1p/AP17 like clathrin adaptor protein 83.2 2e-16
dre:550415 ap1s3a, zgc:112172; adaptor-related protein complex... 83.2 3e-16
hsa:11154 AP4S1, AP47B, CLA20, CLAPS4, FLJ32366; adaptor-relat... 83.2 3e-16
sce:YJR058C APS2, YAP17; Aps2p; K11827 AP-2 complex subunit si... 83.2 3e-16
mmu:252903 Ap1s3, 1190009B22, Jr2, [s]3A; adaptor-related prot... 82.8 4e-16
dre:337771 MGC162858, MGC174667, fj40d12, hm:zewp0159, wu:fj40... 81.3 1e-15
hsa:130340 AP1S3; adaptor-related protein complex 1, sigma 3 s... 80.5 2e-15
pfa:PFB0805c clathrin coat assembly protein, putative 80.1 2e-15
pfa:PFD1090c clathrin assembly protein, putative; K12403 AP-4 ... 79.7 3e-15
bbo:BBOV_IV010890 23.m06432; clathrin assembly protein small s... 78.6 6e-15
dre:100148085 MGC65827, wu:fk78e12; zgc:65827; K11827 AP-2 com... 78.6 7e-15
> tgo:TGME49_015130 adaptor-related protein complex 3, sigma 2
subunit, putative ; K12399 AP-3 complex subunit sigma
Length=158
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 94/138 (68%), Positives = 118/138 (85%), Gaps = 0/138 (0%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK+V+VVN GKPR++RFYDGTP EK QH+++ + VS+RP + CCF E+ +LFG
Sbjct 1 MIKAVIVVNNHGKPRLLRFYDGTPHEKQQHILRRTYQVVSQRPGDSSCCFAEDKELFGLE 60
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+I+YRHFATL+FIF+TD +ESELG+LDLIQV VQVLD+CFENVCELDL++H+DK N+IL
Sbjct 61 TKIVYRHFATLYFIFITDEMESELGVLDLIQVFVQVLDSCFENVCELDLIYHFDKANFIL 120
Query 131 DEIIVGGLVMETGVDNIL 148
DEIIVGGLV+ET VDNIL
Sbjct 121 DEIIVGGLVIETNVDNIL 138
> pfa:PFL2425w adaptor-related protein complex 3, sigma 2 subunit,
putative; K12399 AP-3 complex subunit sigma
Length=153
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 106/138 (76%), Gaps = 4/138 (2%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK V+V+N GKPR +RFYD + EK Q + K ++ + R CCCF E+ +LF +
Sbjct 1 MIKGVLVINNNGKPRFLRFYDESNHEKQQLITKRVYELIKNRLDRECCCFIEDEELFSSD 60
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+++YRHFATL+F+F+ D++ESELG+LDLI QVLD+ FENVCELDL+++Y++INYIL
Sbjct 61 IKVVYRHFATLYFVFIIDSMESELGILDLI----QVLDSNFENVCELDLIYNYEQINYIL 116
Query 131 DEIIVGGLVMETGVDNIL 148
DEII+GG+V+ET +D I+
Sbjct 117 DEIIMGGIVLETNIDTII 134
> cel:Y48G8AL.14 aps-3; AdaPtin, Small chain (clathrin associated
complex) family member (aps-3); K12399 AP-3 complex subunit
sigma
Length=192
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 104/138 (75%), Gaps = 0/138 (0%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK+++V+N GKPR+++FY P+EK Q +++ F VS+R C T + G +
Sbjct 1 MIKAILVINNHGKPRLLKFYQHYPEEKQQQIVRETFQLVSKRDDNVCNFLEGGTLIDGND 60
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+R+IYRH+ATL+FIF D+ ESELG+LDLIQV V+ LD CFENVCELDL+FH D++++IL
Sbjct 61 YRLIYRHYATLYFIFCVDSSESELGILDLIQVFVETLDRCFENVCELDLIFHVDRVHHIL 120
Query 131 DEIIVGGLVMETGVDNIL 148
EI++GG+V+ET ++ IL
Sbjct 121 GEIVMGGMVLETNMNEIL 138
> ath:AT3G50860 clathrin adaptor complex small chain family protein;
K12399 AP-3 complex subunit sigma
Length=166
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK+V+++NTQGKPR+ +FYD P EK Q +++ +F+ + RP E F E LFGP+
Sbjct 1 MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRP-ENVSNFLEIESLFGPD 59
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
R++Y+H+ATL+F+ V D E+EL +LDLIQV+V+ LD CF NVCELD+VF+Y K++ +L
Sbjct 60 SRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVL 119
Query 131 DEIIVGGLVMETGVDNIL 148
DEI+ GG V+ET ++
Sbjct 120 DEIVFGGQVLETSSAEVM 137
> xla:496244 ap3s2; adaptor-related protein complex 3, sigma 2
subunit; K12399 AP-3 complex subunit sigma
Length=193
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 103/139 (74%), Gaps = 2/139 (1%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-P 69
MIK+++V N GKPR +RFY P++ Q +++ F VSRR E C F E L G
Sbjct 1 MIKAILVFNNHGKPRFLRFYQHYPEDTQQQIVRETFHLVSRR-DENVCNFLEGGSLIGGS 59
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++IYRH+ATL+F+F D+ ESELG+LDLIQV V+ LD CFENVCELDL+F+ DK++YI
Sbjct 60 DYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFNVDKVHYI 119
Query 130 LDEIIVGGLVMETGVDNIL 148
L E+++GG+V+ET ++ ++
Sbjct 120 LHEVVMGGMVLETNMNEVI 138
> mmu:11778 Ap3s2, [s]3B; adaptor-related protein complex 3, sigma
2 subunit; K12399 AP-3 complex subunit sigma
Length=193
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 103/139 (74%), Gaps = 2/139 (1%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-P 69
MI++++V N GKPR+VRFY P+E Q +++ F V +R + C F E L G
Sbjct 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKR-DDNICNFLEGGSLIGGS 59
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++IYRH+ATL+F+F D+ ESELG+LDLIQV V+ LD CFENVCELDL+FH DK++YI
Sbjct 60 DYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYI 119
Query 130 LDEIIVGGLVMETGVDNIL 148
L E+++GG+V+ET ++ I+
Sbjct 120 LQEVVMGGMVLETNMNEIV 138
> hsa:10239 AP3S2, AP3S3, FLJ35955, sigma3b; adaptor-related protein
complex 3, sigma 2 subunit; K12399 AP-3 complex subunit
sigma
Length=193
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 103/139 (74%), Gaps = 2/139 (1%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-P 69
MI++++V N GKPR+VRFY P+E Q +++ F V +R + C F E L G
Sbjct 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKR-DDNICNFLEGGSLIGGS 59
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++IYRH+ATL+F+F D+ ESELG+LDLIQV V+ LD CFENVCELDL+FH DK++YI
Sbjct 60 DYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYI 119
Query 130 LDEIIVGGLVMETGVDNIL 148
L E+++GG+V+ET ++ I+
Sbjct 120 LQEVVMGGMVLETNMNEIV 138
> dre:436812 ap3s2, zgc:92795; adaptor-related protein complex
3, sigma 2 subunit; K12399 AP-3 complex subunit sigma
Length=192
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 103/139 (74%), Gaps = 2/139 (1%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-P 69
MIK++++ N GKPR++RFY ++ Q +++ F VS+R + C F E L G
Sbjct 1 MIKAILIFNNHGKPRLIRFYQYFAEDMQQQIIRETFHLVSKR-DDNVCNFLEGGSLIGGS 59
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++IYRH+ATL+F+F D+ ESELG+LDLIQV V+ LD CFENVCELDL+FH DK++YI
Sbjct 60 DYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYI 119
Query 130 LDEIIVGGLVMETGVDNIL 148
L E+++GG+V+ET ++ I+
Sbjct 120 LQEVVMGGMVLETNMNEIV 138
> dre:100334392 adaptor-related protein complex 3, sigma 2 subunit-like;
K12399 AP-3 complex subunit sigma
Length=192
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 103/139 (74%), Gaps = 2/139 (1%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-P 69
MIK++++ N GKPR++RFY ++ Q +++ F VS+R + C F E L G
Sbjct 1 MIKAILIFNNHGKPRLIRFYQYFAEDMQQQIIRETFHLVSKR-DDNVCNFLEGGSLIGGS 59
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++IYRH+ATL+F+F D+ ESELG+LDLIQV V+ LD CFENVCELDL+FH DK++YI
Sbjct 60 DYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYI 119
Query 130 LDEIIVGGLVMETGVDNIL 148
L E+++GG+V+ET ++ I+
Sbjct 120 LQEVVMGGMVLETNMNEIV 138
> dre:449791 ap3s1, wu:fa92f10, zgc:101869; adaptor-related protein
complex 3, sigma 1 subunit; K12399 AP-3 complex subunit
sigma
Length=193
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 101/139 (72%), Gaps = 2/139 (1%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-P 69
MIK++++ N GKPR+ +FY+ ++ Q +++ F VS+R E C F E L G
Sbjct 1 MIKAILIFNNHGKPRLSKFYEHYTEDTEQQIIRETFHLVSKR-DENVCNFLEGGLLIGGS 59
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++IYRH+ATL+F+F D+ ESELG+LDLIQV V+ LD CFENVCELDL+FH DK++ I
Sbjct 60 DNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHNI 119
Query 130 LDEIIVGGLVMETGVDNIL 148
L E+++GG+V+ET + I+
Sbjct 120 LAEMVMGGMVLETNMSEII 138
> mmu:11777 Ap3s1, MGC117528, [s]3A; adaptor-related protein complex
3, sigma 1 subunit; K12399 AP-3 complex subunit sigma
Length=193
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 101/139 (72%), Gaps = 2/139 (1%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-P 69
MIK++++ N GKPR+ +FY ++ Q +++ F VS+R E C F E L G
Sbjct 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKR-DENVCNFLEGGLLIGGS 59
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++IYRH+ATL+F+F D+ ESELG+LDLIQV V+ LD CFENVCELDL+FH DK++ I
Sbjct 60 DNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNI 119
Query 130 LDEIIVGGLVMETGVDNIL 148
L E+++GG+V+ET ++ I+
Sbjct 120 LAEMVMGGMVLETNMNEIV 138
> hsa:1176 AP3S1, CLAPS3, Sigma3A; adaptor-related protein complex
3, sigma 1 subunit; K12399 AP-3 complex subunit sigma
Length=193
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 101/139 (72%), Gaps = 2/139 (1%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-P 69
MIK++++ N GKPR+ +FY ++ Q +++ F VS+R E C F E L G
Sbjct 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKR-DENVCNFLEGGLLIGGS 59
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++IYRH+ATL+F+F D+ ESELG+LDLIQV V+ LD CFENVCELDL+FH DK++ I
Sbjct 60 DNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNI 119
Query 130 LDEIIVGGLVMETGVDNIL 148
L E+++GG+V+ET ++ I+
Sbjct 120 LAEMVMGGMVLETNMNEIV 138
> xla:379829 ap3s1, MGC52794; adaptor-related protein complex
3, sigma 1 subunit; K12399 AP-3 complex subunit sigma
Length=193
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 101/139 (72%), Gaps = 2/139 (1%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-P 69
MIK++++ N GKPR+ +FY ++ Q +++ F VS+R E C F E L G
Sbjct 1 MIKAILIFNNHGKPRLCKFYQHYSEDTQQQIVRETFHLVSKR-DENVCNFLEGGLLIGGS 59
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++IYRH+ATL+F+F D+ ESELG+LDLIQV V+ LD CFENVCELDL+FH DK++ I
Sbjct 60 DNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNI 119
Query 130 LDEIIVGGLVMETGVDNIL 148
L E+++GG+V+ET ++ I+
Sbjct 120 LAEMVMGGMVLETNMNEIV 138
> hsa:100526783 C15orf38-AP3S2, FLJ20488; C15orf38-AP3S2 readthrough
Length=394
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 86/116 (74%), Gaps = 2/116 (1%)
Query 34 PQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-PNHRIIYRHFATLFFIFVTDNLES 92
P+E Q +++ F V +R + C F E L G ++++IYRH+ATL+F+F D+ ES
Sbjct 225 PEEIQQQIVRETFHLVLKR-DDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSES 283
Query 93 ELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYILDEIIVGGLVMETGVDNIL 148
ELG+LDLIQV V+ LD CFENVCELDL+FH DK++YIL E+++GG+V+ET ++ I+
Sbjct 284 ELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIV 339
> sce:YJL024C APS3, YKS7; Aps3p
Length=194
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 93/150 (62%), Gaps = 12/150 (8%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCF--TENTDLFG 68
MI +V++ N + +PR+V+FY K + +++ ++ +S+R S+ F T + L
Sbjct 1 MIHAVLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLS 60
Query 69 PNH----------RIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELD 118
+ +IIY+++ATL+F F+ D+ ESEL +LDLIQ V+ LD CF V ELD
Sbjct 61 NENNNDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELD 120
Query 119 LVFHYDKINYILDEIIVGGLVMETGVDNIL 148
L+F++ + +L+EI+ GG+V+ET V+ I+
Sbjct 121 LIFNWQTLESVLEEIVQGGMVIETNVNRIV 150
> ath:AT2G19790 clathrin adaptor complex small chain family protein;
K12403 AP-4 complex subunit sigma-1
Length=143
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 87/137 (63%), Gaps = 6/137 (4%)
Query 12 IKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPNH 71
I+ +++VN QG+ R+ ++Y+ E+ + + + R + C F E+ N+
Sbjct 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCS-FVEHR-----NY 56
Query 72 RIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYILD 131
+I+YR +A+LFF+ D+ E+EL +L+ I ++V+ +D F NVCELD++FH +K +++L+
Sbjct 57 KIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLE 116
Query 132 EIIVGGLVMETGVDNIL 148
E+++ G ++ET NIL
Sbjct 117 EMVMNGCIVETSKANIL 133
> tgo:TGME49_114420 AP-4 complex subunit sigma-1, putative ; K12403
AP-4 complex subunit sigma-1
Length=145
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 7/139 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK +++VN QG+ R+ ++YD P + + L R +E C F ++
Sbjct 1 MIKFILMVNKQGQTRLSQYYDFVPIPERVALEGELIRKCLGR-TELQCSFVQHR-----Q 54
Query 71 HRIIYRHFATLFFIF-VTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
+ +IYR +A+L+FI V D +EL +L+ I +V+ LD FENVCELD++FH +K ++I
Sbjct 55 YSVIYRRYASLYFIVGVKDEELNELAILEFIHCLVETLDKFFENVCELDIMFHLEKAHFI 114
Query 130 LDEIIVGGLVMETGVDNIL 148
LDE+++ G ++ET N+L
Sbjct 115 LDEMVMDGCIVETNKSNVL 133
> xla:734760 ap4s1, MGC130903; adaptor-related protein complex
4, sigma 1 subunit; K12403 AP-4 complex subunit sigma-1
Length=144
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK ++VN QG+ R+ R+Y+ T ++ + +++S + S+ C F E D
Sbjct 1 MIKFFLIVNKQGQTRLSRYYERTEVQR-RTLLESDIIRLCLSRSKDQCSFIEYKDF---- 55
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+++YR +A+LF + D E+E+ + +LI V+VLD F V ELD++F+ DK++ IL
Sbjct 56 -KLVYRQYASLFIVVGIDETENEMAVFELIHNFVEVLDKYFSRVSELDIMFNLDKVHIIL 114
Query 131 DEIIVGGLVMETGVDNIL 148
DE+++ G +ET IL
Sbjct 115 DEMLLNGSAVETNKTRIL 132
> mmu:11769 Ap1s1, AP19; adaptor protein complex AP-1, sigma 1;
K12394 AP-1 complex subunit sigma 1/2
Length=158
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 87/139 (62%), Gaps = 8/139 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGP 69
M++ +++ + QGK R+ ++Y T ++ + +++ L V +R+P C F E DL
Sbjct 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPK--MCSFLEWRDL--- 55
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
+++Y+ +A+L+F + ++EL L+LI V++LD F +VCELD++F+++K +I
Sbjct 56 --KVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFI 113
Query 130 LDEIIVGGLVMETGVDNIL 148
LDE ++GG V +T ++L
Sbjct 114 LDEFLMGGDVQDTSKKSVL 132
> hsa:1174 AP1S1, AP19, CLAPS1, FLJ92436, SIGMA1A, WUGSC:H_DJ0747G18.2;
adaptor-related protein complex 1, sigma 1 subunit;
K12394 AP-1 complex subunit sigma 1/2
Length=158
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 87/139 (62%), Gaps = 8/139 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGP 69
M++ +++ + QGK R+ ++Y T ++ + +++ L V +R+P C F E DL
Sbjct 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPK--MCSFLEWRDL--- 55
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
+++Y+ +A+L+F + ++EL L+LI V++LD F +VCELD++F+++K +I
Sbjct 56 --KVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFI 113
Query 130 LDEIIVGGLVMETGVDNIL 148
LDE ++GG V +T ++L
Sbjct 114 LDEFLMGGDVQDTSKKSVL 132
> bbo:BBOV_IV010980 23.m06517; clathrin assembly protein small
subunit; K12403 AP-4 complex subunit sigma-1
Length=145
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 10/140 (7%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG-- 68
MIK ++++N QG+ R +Y + + +F C C EN F
Sbjct 1 MIKFILMINKQGQTRFSHYYTSLSVAEKCALEGEIF--------RKCLCRDENQSSFMHI 52
Query 69 PNHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINY 128
H+I+YR +A+L+ I E+EL L++LI +V+ L+ FE+VCE D++F+ +K++Y
Sbjct 53 RQHKIVYRRYASLYIIIGATESENELALIELIHNIVETLEGYFESVCEFDIMFNLEKVHY 112
Query 129 ILDEIIVGGLVMETGVDNIL 148
I++E+I G +++T N+L
Sbjct 113 IINELICNGRIIDTNRSNVL 132
> xla:399079 ap1s1, ap19, claps1, sigma1a; adaptor-related protein
complex 1, sigma 1 subunit; K12394 AP-1 complex subunit
sigma 1/2
Length=157
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 85/138 (61%), Gaps = 8/138 (5%)
Query 12 IKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGPN 70
++ +++ + QGK R+ ++Y P+ + +++ L V SR+P C F E D
Sbjct 1 MRFMLLFSRQGKLRLQKWYVAIPERDKKKLVRDLMQTVLSRKPK--MCSFLEWKDF---- 54
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+++Y+ +A+L+F ++ ++EL L+LI V++LD F +VCELD++F+++K +IL
Sbjct 55 -KVVYKRYASLYFCCAVEDQDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFIL 113
Query 131 DEIIVGGLVMETGVDNIL 148
DE ++GG + +T ++L
Sbjct 114 DEFLMGGEIQDTSKKSVL 131
> ath:AT4G35410 clathrin adaptor complex small chain family protein
Length=162
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MI V++V+ QGK R+ ++Y Q++ V++ L + R + C F E
Sbjct 1 MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPK-LCNFVE-----WRG 54
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
++++Y+ +A+L+F D ++EL +L++I V++LD F +VCELDL+F++ K YIL
Sbjct 55 YKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYIL 114
Query 131 DEIIVGGLVMETGVDNI 147
DE+++ G + E+ +
Sbjct 115 DELLIAGELQESSKKTV 131
> ath:AT2G17380 AP19; AP19; protein binding / protein transporter
Length=161
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MI V++V+ QGK R+ ++Y Q++ V++ L + R + C F E
Sbjct 1 MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPK-LCNFIE-----WRG 54
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
++++Y+ +A+L+F D ++EL +L++I V++LD F +VCELDL+F++ K YIL
Sbjct 55 YKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYIL 114
Query 131 DEIIVGGLVMETGVDNI 147
DE+++ G + E+ +
Sbjct 115 DELLIAGELQESSKKTV 131
> cel:F29G9.3 aps-1; AdaPtin, Small chain (clathrin associated
complex) family member (aps-1); K12394 AP-1 complex subunit
sigma 1/2
Length=157
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 84/139 (60%), Gaps = 8/139 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGP 69
M++ +++ + QGK R+ ++Y P ++ + + + L + +R+P C F E DL
Sbjct 1 MMQYMLLFSRQGKLRLQKWYTAYPDKQKKKICRELITQILARKPK--MCAFLEYKDL--- 55
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
+++Y+ +A+L+F + ++EL L++I V++LD F +VCELD++F+++K +I
Sbjct 56 --KVVYKRYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFI 113
Query 130 LDEIIVGGLVMETGVDNIL 148
LDE ++ G + ET +L
Sbjct 114 LDEFLLAGEIQETSKKQVL 132
> dre:327237 ap1s2, wu:fb94g06, wu:fd19a08, zgc:65824, zgc:77925;
adaptor-related protein complex 1, sigma 2 subunit; K12394
AP-1 complex subunit sigma 1/2
Length=157
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 8/135 (5%)
Query 15 VVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGPNHRI 73
+++ + QGK R+ ++Y + + + + + V +R+P C F E DL +I
Sbjct 4 MLLFSRQGKLRLQKWYVPLSDTQKKKISREVIQMVLARKPK--MCSFLEWRDL-----KI 56
Query 74 IYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYILDEI 133
+Y+ +A+L+F ++ E+EL L++I V++LD F +VCELD++F+++K YILDE
Sbjct 57 VYKRYASLYFCCAVEDQENELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYYILDEF 116
Query 134 IVGGLVMETGVDNIL 148
I+GG ET N+L
Sbjct 117 ILGGEAQETSKKNVL 131
> tgo:TGME49_113450 clathrin coat assembly protein AP17, putative
; K11827 AP-2 complex subunit sigma-1
Length=143
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 82/135 (60%), Gaps = 9/135 (6%)
Query 11 MIKSVVVVNTQGKPRIVRFYDG--TPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFG 68
MI+ V+++N QGK R+ R+Y+G + QEK + V + AAV +R N F
Sbjct 1 MIRFVLLLNRQGKTRLSRWYEGGLSDQEKWK-VESGVQAAVLQRQRRWA-----NILDFR 54
Query 69 PNHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINY 128
H ++YR +A L F+ D+ E++L + + IQ+ V++LD F VCELD++FH DK+ +
Sbjct 55 SYH-LVYRQYAGLVFVVCIDSRENDLAVYEGIQLFVEMLDKYFGTVCELDIIFHVDKVYF 113
Query 129 ILDEIIVGGLVMETG 143
+LD+ I G +++T
Sbjct 114 LLDQFIQAGEIVQTS 128
> xla:443609 ap1s3; adaptor-related protein complex 1, sigma 3
subunit
Length=154
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 86/138 (62%), Gaps = 8/138 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGP 69
MI+ +++ + QGK R+ ++Y P ++ + + + L + SR P F + DL
Sbjct 1 MIRFLLLFSRQGKLRLQKWYVTLPDKEKRKITRELVQIILSRSPK--MSSFVDWKDL--- 55
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
+++Y+ +A+L+F ++ ++EL L+L+ +V++LD F NVCELD++F+++K +I
Sbjct 56 --KLVYKRYASLYFCCAIEDQDNELLTLELVHRLVELLDKYFGNVCELDIIFNFEKAYFI 113
Query 130 LDEIIVGGLVMETGVDNI 147
LDE ++GG + ET +++
Sbjct 114 LDEFLMGGEIQETSKESV 131
> tpv:TP01_0754 clathrin assembly protein
Length=152
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK + +N Q K R+VR++ ++ +++ L V R + C F E
Sbjct 1 MIKFFISLNRQSKVRLVRWFIPVTSKEKSSIIQDLSHMVVNRSLKQCN-FLE-----WRE 54
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
++++++ FA+L+FI D +EL +L++IQ V++LD+ F NVCELDLVF++ K ++L
Sbjct 55 YKVVFKRFASLYFIACVDKDANELLVLEMIQRYVEILDSYFCNVCELDLVFNFTKAYHLL 114
Query 131 DEIIVGGLVMETGVDNIL 148
DEI++ G + +T IL
Sbjct 115 DEILIDGDIYDTNKKGIL 132
> mmu:108012 Ap1s2, 1500012A13Rik, AI853648, EST1; adaptor-related
protein complex 1, sigma 2 subunit; K12394 AP-1 complex
subunit sigma 1/2
Length=160
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 83/135 (61%), Gaps = 8/135 (5%)
Query 15 VVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGPNHRI 73
+++ + QGK R+ ++Y ++ + + + L V +R+P C F E DL +I
Sbjct 4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPK--MCSFLEWRDL-----KI 56
Query 74 IYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYILDEI 133
+Y+ +A+L+F ++ ++EL L++I V++LD F +VCELD++F+++K +ILDE
Sbjct 57 VYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEF 116
Query 134 IVGGLVMETGVDNIL 148
++GG V ET N+L
Sbjct 117 LLGGEVQETSKKNVL 131
> tpv:TP01_0763 clathrin assembly protein; K12403 AP-4 complex
subunit sigma-1
Length=145
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK V+++N +G+ R+ ++Y P E+ + L R C FT +
Sbjct 1 MIKFVLLINKRGQTRLSKYYTNYPLEERTLLESELLRKCITRNENHCPFFT------YKD 54
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
I++R +A+LFFI T + E+EL + +LI +V LD FE+VCE+D++++ +K + IL
Sbjct 55 TTIVFRRYASLFFIIGTTSDENELEIYELIHNIVVALDKHFESVCEIDILYNLEKAHLIL 114
Query 131 DEIIVGGLVMETGVDNIL 148
+E+I G ++E + N+L
Sbjct 115 NEMIANGRIIECNIANVL 132
> xla:495185 ap1s2; adaptor-related protein complex 1, sigma 2
subunit; K12394 AP-1 complex subunit sigma 1/2
Length=160
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 83/135 (61%), Gaps = 8/135 (5%)
Query 15 VVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGPNHRI 73
+++ + QGK R+ ++Y ++ + + + L V +R+P C F E DL +I
Sbjct 4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPK--MCSFLEWRDL-----KI 56
Query 74 IYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYILDEI 133
+Y+ +A+L+F ++ ++EL L++I V++LD F +VCELD++F+++K +ILDE
Sbjct 57 VYKRYASLYFCCAVEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEF 116
Query 134 IVGGLVMETGVDNIL 148
++GG V ET N+L
Sbjct 117 LLGGEVQETSKKNVL 131
> hsa:8905 AP1S2, MGC:1902, MRX59, SIGMA1B; adaptor-related protein
complex 1, sigma 2 subunit; K12394 AP-1 complex subunit
sigma 1/2
Length=157
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 83/135 (61%), Gaps = 8/135 (5%)
Query 15 VVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGPNHRI 73
+++ + QGK R+ ++Y ++ + + + L V +R+P C F E DL +I
Sbjct 4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPK--MCSFLEWRDL-----KI 56
Query 74 IYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYILDEI 133
+Y+ +A+L+F ++ ++EL L++I V++LD F +VCELD++F+++K +ILDE
Sbjct 57 VYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEF 116
Query 134 IVGGLVMETGVDNIL 148
++GG V ET N+L
Sbjct 117 LLGGEVQETSKKNVL 131
> pfa:PF11_0187 clathrin assembly protein AP19, putative
Length=155
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQ-EKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGP 69
MI V++++ QGK R+ ++Y Q EK + + ++ ++R P C F E
Sbjct 1 MIHFVLLISRQGKTRLAKWYIPLSQKEKAKIIRETSQITLNRTPK--LCNFVE-----WR 53
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++++++ +A+LFFI D ++EL L++I V++LD F NVCELDL+F++ K Y+
Sbjct 54 EYKLVFKRYASLFFIACIDKGDNELITLEIIHHYVEILDKYFGNVCELDLIFNFHKAYYL 113
Query 130 LDEIIVGGLVMETGVDNIL 148
LDEI+V G + E+ IL
Sbjct 114 LDEILVTGEMQESSKKTIL 132
> cpv:cgd8_4900 clathrin assembly protein ; K12403 AP-4 complex
subunit sigma-1
Length=158
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 83/139 (59%), Gaps = 7/139 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
M+K +++VN QG+ R+ ++Y +E+ + +++ E C F E N
Sbjct 1 MLKFLLLVNKQGQIRLSQYYTHVSKEE-RFILEGQLIRKCLLKGENQCPFIE-----FNN 54
Query 71 HRIIYRHFATLFFIFVTDNLES-ELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++I++R +A+L+FI +N + EL +LI +V+ LD FENVCELD++F+ DK + I
Sbjct 55 YKIVFRRYASLYFIMGLENSNTNELSYYELIHFIVETLDKYFENVCELDIMFNLDKAHII 114
Query 130 LDEIIVGGLVMETGVDNIL 148
++EII+ G + ET NI+
Sbjct 115 IEEIIMCGRIAETNKSNIM 133
> dre:447897 ap1s3b, zgc:101676; adaptor-related protein complex
1, sigma 3 subunit, b; K12395 AP-1 complex subunit sigma-3
Length=154
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 84/138 (60%), Gaps = 8/138 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENTDLFGP 69
M+ +++ + QGK R+ +++ P+ + ++K + V +R+P C F DL
Sbjct 1 MMHFLLLFSRQGKLRLQKWFLPLPERDRKKIVKDMTTMVLARKPR--TCNFMHWKDL--- 55
Query 70 NHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
+I+Y+ +A+L+F +N ++EL L+++ V++LD F NVCELD++F+++K +I
Sbjct 56 --KIVYKRYASLYFCCGLENQDNELLALEILHRYVELLDKYFGNVCELDIIFNFEKAYFI 113
Query 130 LDEIIVGGLVMETGVDNI 147
LDE ++GG + ET +I
Sbjct 114 LDEFLMGGEIQETSKQSI 131
> tgo:TGME49_070370 clathrin-associated adaptor complex small
chain, putative
Length=174
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 24/157 (15%)
Query 11 MIKSVVVVNTQGKPRIVRFY-------------------DGTPQEKHQHVMKSLFAAVSR 51
MI +++V+ QGK R+ R+Y G P ++ +++ + V +
Sbjct 1 MIHFLLLVSRQGKVRLSRWYLPPSCSSQGPSSGSEGAFAAGLPMKERSELLREAASRVLQ 60
Query 52 RPSEGCCCFTENTDLFGPNHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACF 111
R ++ C N + + +++++ +A+LFFI D+ E+ L L++I V++LD F
Sbjct 61 RSAKQC-----NVVEWRDDTKLVFKRYASLFFIACVDSNENALLTLEVIHHFVEILDRYF 115
Query 112 ENVCELDLVFHYDKINYILDEIIVGGLVMETGVDNIL 148
NVCELDL+F++ K Y+LDEII GG + ET +L
Sbjct 116 GNVCELDLIFNFHKAYYLLDEIICGGELQETSKKAVL 152
> mmu:11782 Ap4s1, AI314282; adaptor-related protein complex AP-4,
sigma 1; K12403 AP-4 complex subunit sigma-1
Length=144
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 6/138 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK ++VN QG+ R+ ++Y+ K + + + R SE C F E D
Sbjct 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCS-FIEYKDF---- 55
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
++IYR +A LF + ++ E+E+ + + I V+VLD F V ELD++F+ DK++ IL
Sbjct 56 -KLIYRQYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIIL 114
Query 131 DEIIVGGLVMETGVDNIL 148
DE+++ G ++ET IL
Sbjct 115 DEMVLNGCIVETNRARIL 132
> ath:AT1G47830 clathrin coat assembly protein, putative; K11827
AP-2 complex subunit sigma-1
Length=142
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 6/138 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MI+ +++ N QGK R+ ++Y + + V + V R ++ FT +
Sbjct 1 MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAK----FTNFVEF--RT 54
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
H++IYR +A LFF D ++EL L+ I + V++LD F NVCELDLVF++ K+ IL
Sbjct 55 HKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLIL 114
Query 131 DEIIVGGLVMETGVDNIL 148
DE I+ G + ET I+
Sbjct 115 DEFILAGELQETSKRAII 132
> cpv:cgd8_4040 Aps1p/AP17 like clathrin adaptor protein
Length=201
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 78/138 (56%), Gaps = 6/138 (4%)
Query 6 QFPSIMIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTD 65
F IM + ++++ QGK R+ ++Y Q + + +K + + R + C F +
Sbjct 15 SFKVIMFRFFLLISRQGKTRLEKWYSSYQQSERKRFIKEVTQMIINRQGK-LCNFID--- 70
Query 66 LFGPNHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDK 125
H ++ + +A+L+F+ D ++EL L++I V+VLD F NVCELDL+F++ K
Sbjct 71 --WKGHTLVVKRYASLYFVACIDKNDNELLALEIIHHYVEVLDRYFGNVCELDLIFNFHK 128
Query 126 INYILDEIIVGGLVMETG 143
+ILDEII+ G + E+
Sbjct 129 AYFILDEIILAGEIEESS 146
> dre:550415 ap1s3a, zgc:112172; adaptor-related protein complex
1, sigma 3 subunit, a
Length=154
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 81/137 (59%), Gaps = 6/137 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
M++ +++ + QGK R+ +++ + +++ L V RP + C F DL
Sbjct 1 MMRFLLLFSRQGKLRLQKWFTVLSDRDKRKIIRDLTQMVLSRPPKACN-FLPWRDL---- 55
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+I+YR +A+L+F + ++EL LD++ V++LD F NVCELD++F+++K +IL
Sbjct 56 -KIVYRRYASLYFCCGLEQDDNELLTLDILHRYVELLDQYFGNVCELDIIFNFEKAYFIL 114
Query 131 DEIIVGGLVMETGVDNI 147
DE ++GG V ET ++
Sbjct 115 DEFVIGGEVQETSKASV 131
> hsa:11154 AP4S1, AP47B, CLA20, CLAPS4, FLJ32366; adaptor-related
protein complex 4, sigma 1 subunit; K12403 AP-4 complex
subunit sigma-1
Length=144
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 6/138 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK ++VN QG+ R+ ++Y+ K + + + R +E C F E D
Sbjct 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCS-FIEYKDF---- 55
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
++IYR +A LF + ++ E+E+ + + I V+VLD F V ELD++F+ DK++ IL
Sbjct 56 -KLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIIL 114
Query 131 DEIIVGGLVMETGVDNIL 148
DE+++ G ++ET IL
Sbjct 115 DEMVLNGCIVETNRARIL 132
> sce:YJR058C APS2, YAP17; Aps2p; K11827 AP-2 complex subunit
sigma-1
Length=147
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query 10 IMIKSVVVVNTQGKPRIVRFYD--GTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLF 67
+ ++ ++ N QG R+VR++D + ++ Q + ++ +S R + F E F
Sbjct 1 MAVQFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVE----F 56
Query 68 GPNHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKIN 127
+ ++IYR +A L+F+ D L+ E L I + V+VLDA F NVCELD+VF++ K+
Sbjct 57 SDSTKLIYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVY 116
Query 128 YILDEIIVGGLVMETGVDNIL 148
I+DE+ +GG + E D +L
Sbjct 117 MIMDEMFIGGEIQEISKDMLL 137
> mmu:252903 Ap1s3, 1190009B22, Jr2, [s]3A; adaptor-related protein
complex AP-1, sigma 3; K12395 AP-1 complex subunit sigma-3
Length=154
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MI +++ + QGK R+ ++Y P ++ + + + + V R F + +L
Sbjct 1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSR-GHRTSSFIDWKEL---- 55
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+++Y+ +A+L+F +N ++EL L+++ V++LD F NVCELD++F+++K +IL
Sbjct 56 -KLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFIL 114
Query 131 DEIIVGGLVMETG 143
DE I+GG + ET
Sbjct 115 DEFIIGGEIQETS 127
> dre:337771 MGC162858, MGC174667, fj40d12, hm:zewp0159, wu:fj40d12;
zgc:162858
Length=181
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 86/144 (59%), Gaps = 10/144 (6%)
Query 8 PSIMIKS--VVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAV-SRRPSEGCCCFTENT 64
P +++K +++ + QGK R+ ++Y ++ + + + L V +R+P C F E
Sbjct 19 PQLLLKMQFMLLFSRQGKLRLQKWYVPLCDKEKKKITRELVQTVLARKPK--MCSFLEWR 76
Query 65 DLFGPNHRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYD 124
DL +I+Y+ +A+L+F ++ ++EL L++I V++LD F +VC LD++F+++
Sbjct 77 DL-----KIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCGLDIIFNFE 131
Query 125 KINYILDEIIVGGLVMETGVDNIL 148
K +ILDE ++GG ET N+L
Sbjct 132 KAYFILDEFLLGGEAQETSKKNVL 155
> hsa:130340 AP1S3; adaptor-related protein complex 1, sigma 3
subunit; K12395 AP-1 complex subunit sigma-3
Length=154
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MI +++ + QGK R+ ++Y P ++ + + + + + R F + +L
Sbjct 1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSR-GHRTSSFVDWKEL---- 55
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+++Y+ +A+L+F +N ++EL L+++ V++LD F NVCELD++F+++K +IL
Sbjct 56 -KLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFIL 114
Query 131 DEIIVGGLVMETG 143
DE I+GG + ET
Sbjct 115 DEFIIGGEIQETS 127
> pfa:PFB0805c clathrin coat assembly protein, putative
Length=141
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 7/138 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
M+ +++ N QGK R ++Y ++K + + + + + R F N
Sbjct 1 MLNFILLQNRQGKTRFSKWYINCNEKKQKKIERDINKILINRSRSYANIFV------YEN 54
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+I+YR +A L+F+ +N E+EL +L+ I + Q+LD F NVCELDL+F++ + Y
Sbjct 55 FKIVYRLYAGLYFVVCIEN-ENELYILEFIHFMAQLLDTFFTNVCELDLLFNFHFLYYFF 113
Query 131 DEIIVGGLVMETGVDNIL 148
D II+GG + E + IL
Sbjct 114 DNIILGGYIYEINRNIIL 131
> pfa:PFD1090c clathrin assembly protein, putative; K12403 AP-4
complex subunit sigma-1
Length=146
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MI+ +++VN QG+ R+ ++Y+ E+ + L R C + L
Sbjct 1 MIEFLLMVNKQGQTRLSQYYNHLSIEEKTILEGELIRKCLSRVDYQC------SFLQYRE 54
Query 71 HRIIYRHFATLFFIF-VTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYI 129
++IIYR +A+L+ I V+D +E +L++I ++++LD +ENVCELD++F+ DK ++I
Sbjct 55 YKIIYRRYASLYLIVGVSDQDVNEFAILEMIHNIIEILDKYYENVCELDIMFNIDKTHFI 114
Query 130 LDEIIVGGLVMETGVDNIL 148
+DEII G + + N+L
Sbjct 115 IDEIICNGEICDMNKTNVL 133
> bbo:BBOV_IV010890 23.m06432; clathrin assembly protein small
subunit
Length=155
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MIK + ++ Q K R+V+++ + +M+ L V R S+ C F E D
Sbjct 1 MIKFFMAISRQCKLRLVKWFVPVDNKDRTAIMRELSHLVVNRNSKQCN-FIEWRD----- 54
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
++++R +A+L+F+ D +EL +L++IQ V++LD F NVCELD+VF+ K +IL
Sbjct 55 DKLVFRRYASLYFVLCVDRDANELLMLEIIQHYVELLDRYFCNVCELDMVFNVTKAYHIL 114
Query 131 DEIIVGGLVMETGVDNIL 148
DE+++ G + E +L
Sbjct 115 DEMLIDGNLYECSKKAVL 132
> dre:100148085 MGC65827, wu:fk78e12; zgc:65827; K11827 AP-2 complex
subunit sigma-1
Length=142
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 6/138 (4%)
Query 11 MIKSVVVVNTQGKPRIVRFYDGTPQEKHQHVMKSLFAAVSRRPSEGCCCFTENTDLFGPN 70
MI+ +++ N GK R+ ++Y ++ Q +++ + A V+ R ++ F E N
Sbjct 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTN-FVE-----FRN 54
Query 71 HRIIYRHFATLFFIFVTDNLESELGLLDLIQVVVQVLDACFENVCELDLVFHYDKINYIL 130
+IIYR +A L+F D ++ L L+ I V+VL+ F NVCELDLVF++ K+ ++
Sbjct 55 FKIIYRRYAGLYFCICVDVTDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 114
Query 131 DEIIVGGLVMETGVDNIL 148
DE+ + G + ET +L
Sbjct 115 DEMFLAGEIRETSQTKVL 132
Lambda K H
0.328 0.145 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3003468616
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40