bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_1182_orf1
Length=155
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_105240 XPA-binding protein, putative ; K12867 pre-m... 171 1e-42
ath:AT5G28740 transcription-coupled DNA repair protein-related... 133 2e-31
tpv:TP01_0087 adapter protein; K12867 pre-mRNA-splicing factor... 129 5e-30
bbo:BBOV_IV000660 21.m02991; XBA-binding protein 2; K12867 pre... 120 2e-27
xla:100036801 xab2; XPA binding protein 2; K12867 pre-mRNA-spl... 117 2e-26
dre:387600 xab2, MGC198247, zgc:63498, zgc:63949; XPA binding ... 115 6e-26
cel:C50F2.3 hypothetical protein; K12867 pre-mRNA-splicing fac... 112 5e-25
hsa:56949 XAB2, DKFZp762C1015, HCNP, HCRN, NTC90, SYF1; XPA bi... 111 8e-25
mmu:67439 Xab2, 0610041O14Rik, AV025587; XPA binding protein 2... 110 2e-24
pfa:PFL1735c RNA-processing protein, putative; K12867 pre-mRNA... 90.1 2e-18
cpv:cgd7_970 Syf1p. protein with 8 HAT domains ; K12867 pre-mR... 68.2 1e-11
sce:YDR416W SYF1, NTC90; Member of the NineTeen Complex (NTC) ... 67.4 2e-11
mmu:18572 Pdcd11, 1110021I22Rik, ALG-4, Pdcd7, mKIAA0185; prog... 47.0 2e-05
xla:779090 pdcd11, alg-4, alg4, nfbp, rrp5; programmed cell de... 46.2 4e-05
hsa:22984 PDCD11, ALG-4, ALG4, KIAA0185, NFBP, RRP5; programme... 44.7 1e-04
cel:M03F8.3 hypothetical protein; K12869 crooked neck 40.0 0.003
hsa:51340 CRNKL1, CLF, CRN, Clf1, HCRN, MSTP021, SYF3; crooked... 40.0 0.003
dre:393920 crnkl1, MGC55327, zgc:55327; crooked neck pre-mRNA ... 38.1 0.012
mmu:66877 Crnkl1, 1200013P10Rik, 5730590A01Rik, C80326, crn; C... 37.7 0.014
ath:AT5G41770 crooked neck protein, putative / cell cycle prot... 35.8 0.055
sce:YLR117C CLF1, NTC77, SYF3; Clf1p; K12869 crooked neck 35.4 0.079
ath:AT3G13210 crooked neck protein, putative / cell cycle prot... 33.9 0.22
tgo:TGME49_069200 crooked neck-like protein 1, putative ; K128... 33.1 0.37
bbo:BBOV_III004750 17.m07426; tetratricopeptide repeat domain ... 33.1 0.40
ath:AT3G51110 crooked neck protein, putative / cell cycle prot... 32.7 0.50
ath:AT5G45990 crooked neck protein, putative / cell cycle prot... 32.3 0.58
xla:100337618 cdh1, arc-1, cd324, cdhe, ecad, lcam, uvo; cadhe... 32.0 0.83
ath:AT3G17040 HCF107; HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107... 31.6 1.1
cel:C25D7.3 sdc-3; Sex determination and Dosage Compensation d... 31.6 1.2
cpv:cgd8_2050 RRP5 like protein involved in rRNA biogenesis wi... 31.6 1.2
pfa:PFD0180c CGI-201 protein, short form; K12869 crooked neck 30.8 1.7
tpv:TP02_0476 crooked neck protein; K12869 crooked neck 30.4 2.5
dre:555623 cps1, si:dkey-225d17.3; carbamoyl-phosphate synthas... 30.4 2.6
hsa:100133511 complement C3-like 29.3 5.5
hsa:718 C3, AHUS5, ARMD9, ASP, CPAMD1; complement component 3 ... 29.3 5.6
> tgo:TGME49_105240 XPA-binding protein, putative ; K12867 pre-mRNA-splicing
factor SYF1
Length=966
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 95/116 (81%), Gaps = 0/116 (0%)
Query 24 VSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAH 83
+ + +T+EL G+ARTR+I+EEAIE LP K R +C+RYA VEK LGE+DR RAIY+H +
Sbjct 678 IYIARTTELLGVARTRQIYEEAIENLPEKQARDMCLRYAAVEKGLGEVDRCRAIYEHCSQ 737
Query 84 LCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQYSQVHHNVAELTAAEA 139
+CDPS+D EFW AW+D EV+YGNE+TFKDMLR+KRSV AQYSQVH NV+EL +A
Sbjct 738 MCDPSRDPEFWKAWKDFEVSYGNEETFKDMLRVKRSVQAQYSQVHQNVSELADTDA 793
> ath:AT5G28740 transcription-coupled DNA repair protein-related;
K12867 pre-mRNA-splicing factor SYF1
Length=917
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 86/111 (77%), Gaps = 1/111 (0%)
Query 24 VSLLQTSELFGLARTRKIFEEAIET-LPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAA 82
+ + + +E+FG+ RTR+I+E+AIE+ LP KDV+ +C+++A +E+ LGEIDR+RA+Y++++
Sbjct 665 IYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRARALYKYSS 724
Query 83 HLCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQYSQVHHNVAE 133
DP D EFWN W + EV +GNEDT+++MLRIKRSV A YSQ H + E
Sbjct 725 QFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVSASYSQTHFILPE 775
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 0/48 (0%)
Query 35 LARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAA 82
L R R++FE A+ P VRT+ ++YA +E+ G R+ +Y+ A
Sbjct 604 LERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEAT 651
> tpv:TP01_0087 adapter protein; K12867 pre-mRNA-splicing factor
SYF1
Length=839
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 92/137 (67%), Gaps = 0/137 (0%)
Query 14 DNKGEAAAVGVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDR 73
D + + + + +T E FG+ +TR+I+++ +E + R +C Y H+E+ LGEIDR
Sbjct 696 DKEDQLTLIKFYVAKTCEFFGVTQTRQIYQQCLEYVNDDVARELCSMYIHMERGLGEIDR 755
Query 74 SRAIYQHAAHLCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQYSQVHHNVAE 133
+RAIY +A+ + DPS +FW WR+ EV +GNED+F++MLRIKRSV AQYS+V++NV E
Sbjct 756 ARAIYIYASQISDPSTYTDFWKGWREFEVLHGNEDSFREMLRIKRSVQAQYSKVYYNVEE 815
Query 134 LTAAEAAKPLPADPVKE 150
+ + + L +P+ E
Sbjct 816 VGQDDDDEELEENPLTE 832
> bbo:BBOV_IV000660 21.m02991; XBA-binding protein 2; K12867 pre-mRNA-splicing
factor SYF1
Length=796
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 82/117 (70%), Gaps = 0/117 (0%)
Query 18 EAAAVGVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAI 77
+ + + + +T+E +G+ +TR I++E +E + + R +C Y +E+ LGEIDR+RAI
Sbjct 674 QMTMIKLYIAKTAEFYGIVQTRNIYQECLEFVDDEIARELCEMYIQMERGLGEIDRARAI 733
Query 78 YQHAAHLCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQYSQVHHNVAEL 134
+ + A LCDP K ++FW WR+ EV +GNE+ F++MLRIKRSV A++S+VH N E+
Sbjct 734 FTYCAQLCDPMKYEKFWKDWREFEVLHGNEECFREMLRIKRSVQARFSKVHFNAEEI 790
> xla:100036801 xab2; XPA binding protein 2; K12867 pre-mRNA-splicing
factor SYF1
Length=838
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 86/133 (64%), Gaps = 7/133 (5%)
Query 23 GVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAA 82
+ + + +E++G+ TR I+E AIE LP + R +C+R+A +E LGEIDR+RAIY + +
Sbjct 624 NIYIKRAAEIYGVTHTRTIYERAIELLPDEQSREMCLRFADMECKLGEIDRARAIYSYCS 683
Query 83 HLCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQYSQ-----VHHNV-AELTA 136
+CDP FW WRD EV +GNEDT ++MLR+KRSV A+Y+ V + AE A
Sbjct 684 QICDPRLTAGFWQTWRDFEVRHGNEDTLREMLRVKRSVQAKYNTQGTFLVSQKLRAEGGA 743
Query 137 AEAAKPLPADPVK 149
+E K PAD ++
Sbjct 744 SEGTKE-PADEMQ 755
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 0/63 (0%)
Query 35 LARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFW 94
L R R +FE++++ P K + + + YA +E+ G + A+Y+ A + + E +
Sbjct 564 LERARDLFEQSLDGCPRKFAKNIFLLYAKLEEEHGLARHAMALYERATQAVETGEQYEMF 623
Query 95 NAW 97
N +
Sbjct 624 NIY 626
> dre:387600 xab2, MGC198247, zgc:63498, zgc:63949; XPA binding
protein 2; K12867 pre-mRNA-splicing factor SYF1
Length=851
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 80/116 (68%), Gaps = 1/116 (0%)
Query 23 GVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAA 82
+ + + +E++G+ TR I+++AIE LP + R +C+R+A +E LGEIDR+RAIY + +
Sbjct 628 NIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHARDMCLRFADMESKLGEIDRARAIYSYCS 687
Query 83 HLCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQY-SQVHHNVAELTAA 137
+CDP FW W++ E+ +GNEDT ++MLRIKRSV A Y +QV+ +++ A
Sbjct 688 QICDPRVTAHFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQMLKA 743
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 0/63 (0%)
Query 35 LARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFW 94
L R R +FE+A++ P K +T+ + YA +E+ G + A+Y+ A + + + +
Sbjct 568 LERARDLFEQALDGCPAKYAKTIYLLYAKLEEEYGLARHAMAVYERATAAVEAEERHQMF 627
Query 95 NAW 97
N +
Sbjct 628 NIY 630
> cel:C50F2.3 hypothetical protein; K12867 pre-mRNA-splicing factor
SYF1
Length=855
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 71/103 (68%), Gaps = 0/103 (0%)
Query 23 GVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAA 82
+ + + E++G+A+ R IFE AI LP R + +RYA +E +GEIDR+RAIY HAA
Sbjct 637 NIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAA 696
Query 83 HLCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQYS 125
+ DP +FW+ W++ EVA+GNE T +DMLR++RSV A Y+
Sbjct 697 EISDPKVHVKFWDTWKNFEVAHGNEATVRDMLRVRRSVEASYN 739
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query 35 LARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFW 94
L R R +FE+ +E PP + + + YA +E+ G + +IY A D + +
Sbjct 577 LERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYNRACSGVDRADMHSMY 636
Query 95 NAW-RDLEVAYG-------NEDTFKDMLRIK-RSVIAQYSQVHHNVAELTAAEA 139
N + + ++ YG E ++ K R++ +Y+Q+ V E+ A A
Sbjct 637 NIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSLRYAQLETTVGEIDRARA 690
> hsa:56949 XAB2, DKFZp762C1015, HCNP, HCRN, NTC90, SYF1; XPA
binding protein 2; K12867 pre-mRNA-splicing factor SYF1
Length=855
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query 23 GVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAA 82
+ + + +E++G+ TR I+++AIE L + R +C+R+A +E LGEIDR+RAIY +
Sbjct 633 NIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCS 692
Query 83 HLCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQY-SQVHHNVAEL 134
+CDP FW W+D EV +GNEDT K+MLRI+RSV A Y +QV+ +++
Sbjct 693 QICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQVNFMASQM 745
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 0/63 (0%)
Query 35 LARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFW 94
L R R +FE+A++ PPK +T+ + YA +E+ G + A+Y+ A +P++ + +
Sbjct 573 LERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMF 632
Query 95 NAW 97
N +
Sbjct 633 NIY 635
> mmu:67439 Xab2, 0610041O14Rik, AV025587; XPA binding protein
2; K12867 pre-mRNA-splicing factor SYF1
Length=855
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query 23 GVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAA 82
+ + + +E++G+ TR I+++AIE L + R +C+R+A +E LGEIDR+RAIY +
Sbjct 633 NIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCS 692
Query 83 HLCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQY-SQVHHNVAEL 134
+CDP FW W+D EV +GNEDT ++MLRI+RSV A Y +QV+ +++
Sbjct 693 QICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQM 745
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 0/63 (0%)
Query 35 LARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFW 94
L R R +FE+A++ PPK +T+ + YA +E+ G + A+Y A +P++ + +
Sbjct 573 LERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMF 632
Query 95 NAW 97
N +
Sbjct 633 NIY 635
> pfa:PFL1735c RNA-processing protein, putative; K12867 pre-mRNA-splicing
factor SYF1
Length=1031
Score = 90.1 bits (222), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 0/106 (0%)
Query 28 QTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDP 87
+ S +G+ + R+ FEEAI+TL R +CM Y +E L E +R RA+Y + A +P
Sbjct 886 KVSRAYGIQKAREAFEEAIQTLSDDSARQLCMIYIDMEYKLNEYERVRALYIYTAQYTNP 945
Query 88 SKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQYSQVHHNVAE 133
+F+ WR+ E +GNE+TF++M+RIKRSV+ +S +N+ +
Sbjct 946 LLYMDFYKDWREFEALHGNENTFREMIRIKRSVLNIFSNSRNNMED 991
> cpv:cgd7_970 Syf1p. protein with 8 HAT domains ; K12867 pre-mRNA-splicing
factor SYF1
Length=1020
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 59/95 (62%), Gaps = 9/95 (9%)
Query 35 LARTRKIFEEAIETLPPKDVRT-VCMRYAHVEKCLGEIDRSRAIYQHAA------HLCDP 87
++ TRKIF+ AI+ + D+ + +RY + E +GE++R R+I+ A +L +
Sbjct 816 ISYTRKIFDMAIDDIKASDIIIRLSLRYINFELNMGEVNRVRSIFIFAGDLIPNIYLMNE 875
Query 88 SKD--QEFWNAWRDLEVAYGNEDTFKDMLRIKRSV 120
+ +FW++W E+ YGNEDT KDMLRIK++V
Sbjct 876 HIEIFNKFWSSWNQFELEYGNEDTIKDMLRIKKNV 910
> sce:YDR416W SYF1, NTC90; Member of the NineTeen Complex (NTC)
that contains Prp19p and stabilizes U6 snRNA in catalytic
forms of the spliceosome containing U2, U5, and U6 snRNAs; null
mutant has splicing defect and arrests in G2/M; homologs
in human and C. elegans; K12867 pre-mRNA-splicing factor SYF1
Length=859
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query 33 FGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQE 92
G + TR++++E I+ LP ++++ E +GE R+R I + A L PS++ E
Sbjct 720 LGPSVTRELYQECIQILPNSKAVEFVIKFSDFESSIGETIRAREILAYGAKLLPPSRNTE 779
Query 93 FWNAWRDLEVAYGNEDTFKDMLRIKR----SVIAQYSQVHH---NVAELTAAEAAKP 142
W+++ E+ +G+++T+KDML++K+ +++ + V H N+ + AA + P
Sbjct 780 LWDSFEIFELKHGDKETYKDMLKMKKVLESNMLIDSASVSHEEGNINFVAAATSHAP 836
> mmu:18572 Pdcd11, 1110021I22Rik, ALG-4, Pdcd7, mKIAA0185; programmed
cell death 11; K14792 rRNA biogenesis protein RRP5
Length=1862
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query 33 FGLARTR-----KIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDP 87
F L R++ ++ + A+E LP K+ V +++A +E LG+++R++AI+++ L
Sbjct 1725 FVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAKAIFENT--LSTY 1782
Query 88 SKDQEFWNAWRDLEVAYGNEDTFKDML 114
K + W+ + D+ + +G++ +D+
Sbjct 1783 PKRTDVWSVYIDMTIKHGSQTAVRDIF 1809
> xla:779090 pdcd11, alg-4, alg4, nfbp, rrp5; programmed cell
death 11; K14792 rRNA biogenesis protein RRP5
Length=1812
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query 38 TRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFWNAW 97
T K+ + A+++LP KD V ++A +E LG+ +R++A+++ + L K + W+ +
Sbjct 1685 THKLLQRALKSLPEKDHVDVISKFAQLEFQLGDTERAKALFE--STLSSYPKRTDLWSVY 1742
Query 98 RDLEVAYGNEDTFKDML 114
D+ V +G++ +D+
Sbjct 1743 IDMMVKHGSQKEVRDIF 1759
> hsa:22984 PDCD11, ALG-4, ALG4, KIAA0185, NFBP, RRP5; programmed
cell death 11; K14792 rRNA biogenesis protein RRP5
Length=1871
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query 23 GVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAA 82
G LL+ S+ A + ++ + A+E LP K+ V ++A +E LG+ +R++AI+++
Sbjct 1732 GAFLLRRSQA---AASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENT- 1787
Query 83 HLCDPSKDQEFWNAWRDLEVAYGNEDTFKDML 114
L K + W+ + D+ + +G++ +D+
Sbjct 1788 -LSTYPKRTDVWSVYIDMTIKHGSQKDVRDIF 1818
> cel:M03F8.3 hypothetical protein; K12869 crooked neck
Length=747
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query 37 RTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFWNA 96
R RK++E+ +E+ P + +++A +E LG+ DRSRA++ A + W A
Sbjct 473 RCRKLYEKFLESSP--ESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPELLWKA 530
Query 97 WRDLEVAYGNEDTFKDM 113
+ D E+A + +D+
Sbjct 531 YIDFEIACEEHEKARDL 547
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query 39 RKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHL 84
R+IFE IE PP+ Y + E EIDR+R++YQ H+
Sbjct 174 RQIFERWIEWEPPE---QAWQTYINFELRYKEIDRARSVYQRFLHV 216
> hsa:51340 CRNKL1, CLF, CRN, Clf1, HCRN, MSTP021, SYF3; crooked
neck pre-mRNA splicing factor-like 1 (Drosophila); K12869
crooked neck
Length=848
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query 31 ELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKD 90
+L R RK++E+ +E P T +++A +E LG+IDR+RAIY+ A + P D
Sbjct 618 QLREFDRCRKLYEKFLEFGPENC--TSWIKFAELETILGDIDRARAIYELA--ISQPRLD 673
Query 91 --QEFWNAWRDLEVAYGNEDTFKDMLR 115
+ W ++ D E+ + +++ R
Sbjct 674 MPEVLWKSYIDFEIEQEETERTRNLYR 700
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query 37 RTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHA 81
R RK FE+ I + V + ++YA E+ L EI R+R+IY+ A
Sbjct 226 RKRKTFEDNIRK--NRTVISNWIKYAQWEESLKEIQRARSIYERA 268
> dre:393920 crnkl1, MGC55327, zgc:55327; crooked neck pre-mRNA
splicing factor-like 1 (Drosophila); K12869 crooked neck
Length=753
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query 35 LARTRKIFEEAIETLPPKDV-RTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEF 93
+AR RK+FE A+E + V + + +A E+ E +R R IY++A + QE
Sbjct 230 VARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQEL 289
Query 94 WNAWRDLEVAYGNEDTFKDMLRIKR 118
+ + E +G+ +D++ KR
Sbjct 290 FKNYTVFEKRFGDRRGIEDVIVSKR 314
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query 31 ELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKD 90
+L R RK++E+ +E P + T +++A +E LG+ DRSRAI++ A + P D
Sbjct 456 QLREFDRCRKLYEKYLEFSP--ENCTTWIKFAELETILGDTDRSRAIFELA--IGQPRLD 511
Query 91 --QEFWNAWRDLEV 102
+ W ++ D E+
Sbjct 512 MPEVLWKSYIDFEI 525
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query 37 RTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHA 81
+ RK FE+ I + V + ++YA E+ L E+ RSR+IY+ A
Sbjct 64 KKRKGFEDNIRK--NRTVISNWIKYAQWEESLQEVQRSRSIYERA 106
> mmu:66877 Crnkl1, 1200013P10Rik, 5730590A01Rik, C80326, crn;
Crn, crooked neck-like 1 (Drosophila); K12869 crooked neck
Length=690
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query 31 ELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKD 90
+L R RK++E+ +E P++ T +++A +E LG+I+R+RAIY+ A + P D
Sbjct 457 QLREFDRCRKLYEKFLE-FGPENC-TSWIKFAELETILGDIERARAIYELA--ISQPRLD 512
Query 91 --QEFWNAWRDLEVAYGNEDTFKDMLR 115
+ W ++ D E+ + +++ R
Sbjct 513 MPEVLWKSYIDFEIEQEETERTRNLYR 539
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query 37 RTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHA 81
R RK FE+ I + V + ++YA E+ L EI R+R+IY+ A
Sbjct 65 RKRKTFEDNIRK--NRTVISNWIKYAQWEESLKEIQRARSIYERA 107
> ath:AT5G41770 crooked neck protein, putative / cell cycle protein,
putative; K12869 crooked neck
Length=705
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query 31 ELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKD 90
+L + R RK++E +E P +YA +E+ L E +R+RAI++ A + P+ D
Sbjct 468 QLGNMDRCRKLYERYLEWSPENCY--AWSKYAELERSLVETERARAIFELA--ISQPALD 523
Query 91 --QEFWNAWRDLEVAYG 105
+ W A+ D E++ G
Sbjct 524 MPELLWKAYIDFEISEG 540
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query 35 LARTRKIFEEAIETLPP-KDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEF 93
+AR R ++E A E L ++ + + +A E+ E++R+R IY+ A + ++
Sbjct 242 VARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDL 301
Query 94 WNAWRDLEVAYGNEDTFKDMLRIKR 118
+ + E YG+++ +D + KR
Sbjct 302 YRKFVAFEKQYGDKEGIEDAIVGKR 326
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query 37 RTRKIFEEAIETLPPKDVRTVCMRYAHV--------EKCLGEIDRSRAIYQHAAHLCDPS 88
R R+I+E AI +PP + + RY ++ E +I+R+R +Y+ L S
Sbjct 359 RIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHS 418
Query 89 K 89
K
Sbjct 419 K 419
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 0/45 (0%)
Query 61 YAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFWNAWRDLEVAYG 105
Y +E+ +G DR R IY+ A P++++ +W + L + Y
Sbjct 347 YVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYA 391
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query 37 RTRKIFEEAIETLPPKDVRTVCMR-YAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFWN 95
R R IFE AI + P D+ + + Y E GE++R+RA+Y+ L D +K + W
Sbjct 508 RARAIFELAI-SQPALDMPELLWKAYIDFEISEGELERTRALYE---RLLDRTKHYKVWV 563
Query 96 AWRDLEVA 103
++ E +
Sbjct 564 SFAKFEAS 571
> sce:YLR117C CLF1, NTC77, SYF3; Clf1p; K12869 crooked neck
Length=687
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query 37 RTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHA 81
R RKI+E+ IE P D++ + +Y +E+ LG+ DR R IY A
Sbjct 455 RVRKIYEKFIE-FQPSDLQ-IWSQYGELEENLGDWDRVRGIYTIA 497
> ath:AT3G13210 crooked neck protein, putative / cell cycle protein,
putative
Length=657
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query 31 ELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKD 90
+L + R RK++E +E P +YA E L E +R+RAI++ A + P+ D
Sbjct 425 QLRNIDRCRKLYERYLEWSPGNCY--AWRKYAEFEMSLAETERTRAIFELA--ISQPALD 480
Query 91 --QEFWNAWRDLEVAYG 105
+ W + D E++ G
Sbjct 481 MPELLWKTYIDFEISEG 497
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query 37 RTRKIFEEAIETLPPKDVRTVCMR-YAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFW 94
RTR IFE AI + P D+ + + Y E GE++R+RA+Y+ L D +K + W
Sbjct 465 RTRAIFELAI-SQPALDMPELLWKTYIDFEISEGELERTRALYE---RLLDRTKHCKVW 519
> tgo:TGME49_069200 crooked neck-like protein 1, putative ; K12869
crooked neck
Length=794
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query 35 LARTRKIFEEAIETLPPKDV-RTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEF 93
+ R R FE+AIE LP + +++A E+ E +R++ IYQ A +
Sbjct 355 IPRARAGFEKAIELLPEDMLDEHFFLKFAQFEERQRETERAKVIYQQALEQLPKGESDLL 414
Query 94 WNAWRDLEVAYGNEDTFKDMLRIKRSVI 121
+ + + +G+++ +D + KR +
Sbjct 415 YEKYVTFQKQFGDKEGIEDTVLSKRVFV 442
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query 61 YAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFWNAWRDLEVAYG--NEDTFKDMLRIKR 118
Y +E+ G+ID+ R +Y+ A P ++ FW + + ++Y E KD+ R ++
Sbjct 460 YIRLEESRGDIDKIRNVYERALANVPPVLEKRFWKRYVYIWISYALFEELQAKDVERCRQ 519
Query 119 SVIAQYSQVHHN 130
+ + H
Sbjct 520 VYVKMLEVIPHK 531
> bbo:BBOV_III004750 17.m07426; tetratricopeptide repeat domain
containing protein; K12869 crooked neck
Length=665
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query 36 ARTRKIFEEAIETLPPKDVRTVCMRYAHV--------EKCLGEIDRSRAIYQHAAHLCDP 87
AR +++E AI LP D R + RY+++ E L ++DR+ A+Y+ A + P
Sbjct 354 ARVCELYERAISNLPQVDDRRLWRRYSYLWVGYAIFSELTLQQLDRAVAVYRKALQVL-P 412
Query 88 SKDQEFWNAWRDLEVAYGNEDTFKDMLRI------KRSVIAQYSQVHHNVAEL 134
+F+ +L + G+ D+ + + K + Y+Q+ + L
Sbjct 413 KDFAKFYILLAELYLRQGDLDSMRKTFGLGLGQCKKPKLFETYAQIELKLGNL 465
> ath:AT3G51110 crooked neck protein, putative / cell cycle protein,
putative
Length=413
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query 39 RKIFEEAIETLPPKDVR----TVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFW 94
R ++E AIE L KDV + + +A E+ E++R+R +Y++A + ++ +
Sbjct 226 RIVYERAIEML--KDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLY 283
Query 95 NAWRDLEVAYGNEDTFKDMLRIKRSV 120
+ E YGN++ D + +R +
Sbjct 284 KKFVAFEKQYGNKEGIDDAIVGRRKL 309
> ath:AT5G45990 crooked neck protein, putative / cell cycle protein,
putative
Length=673
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query 32 LFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKD- 90
L + R RK++E +E P YA E L E +R+RAI++ A + P+ D
Sbjct 456 LVNIDRCRKLYERFLEWSPENCY--AWRNYAEFEISLAETERARAIFELA--ISQPALDM 511
Query 91 -QEFWNAWRDLEVAYG 105
+ W + D E++ G
Sbjct 512 PELLWKTYIDFEISEG 527
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 0/45 (0%)
Query 61 YAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFWNAWRDLEVAYG 105
Y +E+ +G DR R IY+ A P++++ FW + L + Y
Sbjct 334 YVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYA 378
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query 39 RKIFEEAIETLP-PKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFWNAW 97
R+++E A++ L ++ + + +A E+ E++R+R IY+ A + +E + +
Sbjct 233 REVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKF 292
Query 98 RDLEVAYGNEDTFKDML 114
E YG+++ +D +
Sbjct 293 VAFEKQYGDKEGIEDAI 309
> xla:100337618 cdh1, arc-1, cd324, cdhe, ecad, lcam, uvo; cadherin
1, type 1, E-cadherin (epithelial)
Length=872
Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 0/61 (0%)
Query 87 PSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQYSQVHHNVAELTAAEAAKPLPAD 146
P +D+ N + E G ED D+ ++ R + A+ + ++VA + AA +P PA+
Sbjct 735 PPEDETRDNVFSYDEEGGGEEDQDFDLSQLHRGLDARPDVIRNDVAPVLAAPQYRPRPAN 794
Query 147 P 147
P
Sbjct 795 P 795
> ath:AT3G17040 HCF107; HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107);
binding
Length=652
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query 35 LARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFW 94
LA R ++E+ ++ ++ + +A +E LG + R+R ++ AA + D K W
Sbjct 218 LAEARILYEKGCQSTQGEN-SYIWQCWAVLENRLGNVRRARELFD-AATVAD-KKHVAAW 274
Query 95 NAWRDLEVAYGNEDTFKDMLRIKRSVIAQYSQVHHNVAELTA 136
+ W +LE+ GN +++L + ++ +A L A
Sbjct 275 HGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLALLEA 316
> cel:C25D7.3 sdc-3; Sex determination and Dosage Compensation
defect family member (sdc-3)
Length=2150
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query 79 QHAAHLCDPSKDQEFWNAWRDLEVAYGNEDTFKDMLRIKRSVIAQYSQVHHN 130
++ H+ DP +QEFW+ +R L++ + ED ++ + + R +++ + N
Sbjct 280 KNVYHMTDPQCEQEFWDVYR-LQMQWLEEDNIEENITMLRENLSKVTDEEFN 330
> cpv:cgd8_2050 RRP5 like protein involved in rRNA biogenesis
with 7 S1 domains and 5 HAT repeats ; K14792 rRNA biogenesis
protein RRP5
Length=2002
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query 52 KDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFWNAW---RDLEVAYGNED 108
+DV ++ +RY L ++D++R + + + ++ E WN W ++E+ YG +
Sbjct 1712 RDVSSLWIRYMSYYLDLEDLDKARMVAERSLKQISVKEEMERWNIWIAYINMEIVYGKNE 1771
> pfa:PFD0180c CGI-201 protein, short form; K12869 crooked neck
Length=780
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query 31 ELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKD 90
+L + R ++ + +E P + M + E L E++R+R I + A +L D
Sbjct 454 KLGNIRECRNVYAKYVEAFPFNSKAWISM--INFELSLDEVERARQIAEIAINLDDMKLP 511
Query 91 QEFWNAWRDLEV---AYGNEDTFKDMLRIKRSVIAQYSQVHHNVAELT 135
+ W + D+E+ Y N D L I Q+ +V+ + AE T
Sbjct 512 ELIWKNYIDMEINLQEYDNARKLYDRLL----NITQHYKVYKSYAEFT 555
> tpv:TP02_0476 crooked neck protein; K12869 crooked neck
Length=657
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query 37 RTRKIFEEAIETLPPKDVRTVCMRYAHVEKCLGEIDRSRAIYQHAAHLCDPSKDQEFWNA 96
R +I+ ++++ LP +D + + + + +G++ + R++ +A LC K ++ +
Sbjct 397 RAEEIYLKSLQILP-RDFSKIYIYLSQLYLRMGDLKKMRSVMGNAIGLC---KKEKIFET 452
Query 97 WRDLEVAYGNED 108
+ D+E+ GN D
Sbjct 453 YSDIELKLGNID 464
> dre:555623 cps1, si:dkey-225d17.3; carbamoyl-phosphate synthase
1, mitochondrial; K01948 carbamoyl-phosphate synthase (ammonia)
[EC:6.3.4.16]
Length=1524
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query 10 RYNKDN---KGEAAAVGVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVEK 66
++ KDN + A GV L+ ++ K+F EAI D T Y E
Sbjct 1434 KFLKDNFQIRRMAVDYGVPLITNFQVV------KLFAEAIRYSSELDA-TSLFHYRQREP 1486
Query 67 CLGEIDRSRAIYQHAAHL----CDPSKD 90
LG ++R + Y H +HL C P++D
Sbjct 1487 RLGRLNRYKRFYNHESHLTGFFCRPTQD 1514
> hsa:100133511 complement C3-like
Length=1295
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query 6 FYEQRYNKDNKGEAAAVGVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVE 65
Y R N++ K V V LL LA T++ ++ + T+PPK +V ++
Sbjct 851 LYNYRQNQELK-----VRVELLHNPAFCSLATTKRRHQQTV-TIPPKSSLSVPYVIVPLK 904
Query 66 KCLGEIDRSRAIYQH 80
L E++ A+Y H
Sbjct 905 TGLQEVEVKAAVYHH 919
> hsa:718 C3, AHUS5, ARMD9, ASP, CPAMD1; complement component
3 (EC:3.4.21.43); K03990 complement component 3
Length=1663
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query 6 FYEQRYNKDNKGEAAAVGVSLLQTSELFGLARTRKIFEEAIETLPPKDVRTVCMRYAHVE 65
Y R N++ K V V LL LA T++ ++ + T+PPK +V ++
Sbjct 851 LYNYRQNQELK-----VRVELLHNPAFCSLATTKRRHQQTV-TIPPKSSLSVPYVIVPLK 904
Query 66 KCLGEIDRSRAIYQH 80
L E++ A+Y H
Sbjct 905 TGLQEVEVKAAVYHH 919
Lambda K H
0.319 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3386671600
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40