bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_2184_orf1
Length=132
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_024850 polyadenylate-binding protein, putative ; K1... 197 7e-51
pfa:PFL1170w polyadenylate-binding protein, putative; K13126 p... 168 5e-42
cpv:cgd6_3010 poly(a)-binding protein fabm ; K13126 polyadenyl... 141 7e-34
hsa:8761 PABPC4, APP-1, APP1, FLJ43938, PABP4, iPABP; poly(A) ... 137 8e-33
xla:444284 pabpc4, MGC80927, PABP, ePAB, ePABP; poly(A) bindin... 137 1e-32
mmu:381404 Pabpc1l, 1810053B01Rik, Epab; poly(A) binding prote... 135 3e-32
dre:321035 pabpc4, cb12, sb:cb12; poly(A) binding protein, cyt... 135 3e-32
mmu:230721 Pabpc4, MGC11665, MGC6685; poly(A) binding protein,... 134 5e-32
dre:327625 pabpc1l, fi20g03, pab-2, wu:fi20g03, zgc:55855; pol... 134 7e-32
dre:393856 pabpc1b, MGC77608, pabpc1, zgc:77608; poly A bindin... 132 3e-31
xla:443777 pabpc1l-b, MGC81363, epab, epabp-b, pabpc1l1; poly(... 132 4e-31
xla:432140 pabpc1-b, MGC130736, MGC79060, pab1, pabp, pabp1, p... 132 4e-31
xla:398221 pabpc1l-a, MGC82273, ePAB, epabp-a, pabpc1l1; poly(... 131 4e-31
mmu:18458 Pabpc1, PABP, Pabp1, PabpI, Pabpl1, ePAB; poly(A) bi... 130 8e-31
hsa:26986 PABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1; poly(A) b... 130 9e-31
bbo:BBOV_IV008280 23.m06515; polyadenylate binding protein; K1... 130 9e-31
xla:379896 pabpc1-a, MGC53109, pab1, pabp, pabp1, pabpc1, pabp... 130 1e-30
hsa:80336 PABPC1L, C20orf119, FLJ11840, FLJ30809, FLJ42053, PA... 130 1e-30
ath:AT1G49760 PAB8; PAB8 (POLY(A) BINDING PROTEIN 8); RNA bind... 130 1e-30
cel:Y106G6H.2 pab-1; PolyA Binding protein family member (pab-... 130 1e-30
dre:606498 pabpc1a, pabpc1, wu:fb16a02, wu:fi19b08, wu:fj12d09... 129 2e-30
cel:F18H3.3 pab-2; PolyA Binding protein family member (pab-2)... 129 2e-30
ath:AT2G23350 PAB4; PAB4 (POLY(A) BINDING PROTEIN 4); RNA bind... 127 9e-30
sce:YER165W PAB1; Pab1p; K13126 polyadenylate-binding protein 127 1e-29
mmu:18459 Pabpc2, PABP, PABP+, Pabp2; poly(A) binding protein,... 126 2e-29
hsa:5042 PABPC3, PABP3, PABPL3, tPABP; poly(A) binding protein... 125 4e-29
ath:AT4G34110 PAB2; PAB2 (POLY(A) BINDING 2); RNA binding / tr... 124 5e-29
tpv:TP01_0945 polyadenylate binding protein; K13126 polyadenyl... 124 5e-29
ath:AT1G22760 PAB3; PAB3 (POLY(A) BINDING PROTEIN 3); RNA bind... 122 2e-28
ath:AT1G71770 PAB5; PAB5 (POLY(A)-BINDING PROTEIN 5); RNA bind... 122 3e-28
mmu:67543 Pabpc6, 4932702K14Rik, AI428050, MGC132900, Pabpc3; ... 117 8e-27
xla:495336 hypothetical LOC495336 115 4e-26
ath:AT1G34140 PAB1; PAB1 (POLY(A) BINDING PROTEIN 1); RNA bind... 112 3e-25
hsa:132430 PABPC4L, DKFZp686J06116; poly(A) binding protein, c... 112 4e-25
ath:AT2G36660 PAB7; PAB7 (POLY(A) BINDING PROTEIN 7); RNA bind... 108 4e-24
mmu:241989 Pabpc4l, C330050A14Rik, EG241989; poly(A) binding p... 98.2 6e-21
hsa:140886 PABPC5, FLJ51677, PABP5; poly(A) binding protein, c... 90.9 1e-18
mmu:93728 Pabpc5, C820015E17, MGC130340, MGC130341; poly(A) bi... 90.5 1e-18
ath:AT3G16380 PAB6; PAB6 (POLY(A) BINDING PROTEIN 6); RNA bind... 89.7 2e-18
tgo:TGME49_024580 splicing factor, putative (EC:3.1.2.15); K12... 66.6 2e-11
ath:AT5G54580 RNA recognition motif (RRM)-containing protein 65.5 5e-11
mmu:100503296 polyadenylate-binding protein 4-like 63.9 1e-10
pfa:PF14_0194 spliceosome-associated protein, putative; K12831... 63.5 1e-10
sce:YNL016W PUB1, RNP1; Poly (A)+ RNA-binding protein, abundan... 62.8 3e-10
ath:AT3G04500 RNA recognition motif (RRM)-containing protein 62.8 3e-10
cel:C18A3.5 hypothetical protein; K13201 nucleolysin TIA-1/TIAR 62.0 5e-10
pfa:MAL8P1.40 RNA binding protein, putative 61.6 6e-10
ath:AT3G23830 GRP4; GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4);... 60.8 1e-09
cel:C07A4.1 hypothetical protein 60.5 1e-09
bbo:BBOV_III006220 17.m07552; RNA recognition motif domaining ... 58.5 5e-09
> tgo:TGME49_024850 polyadenylate-binding protein, putative ;
K13126 polyadenylate-binding protein
Length=768
Score = 197 bits (501), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 110/127 (86%), Gaps = 0/127 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
ILFVGPHQS+A R+A LR K+EQ Q+R +R++GVNLY+KN+D+S+DD+KLR+LFE FG
Sbjct 354 ILFVGPHQSKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGS 413
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVMRDE+GVS+ FGFVCF+SP++A+KAV +MHLK V GKPLY GLAERREQR RL
Sbjct 414 ITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRL 473
Query 126 QQRFRLP 132
QQRFRLP
Sbjct 474 QQRFRLP 480
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 0/89 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N++VKNLD ++D+ L + F FG S KV D+ G SKG+GFV + + + A A+ +
Sbjct 172 NIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKV 231
Query 101 HLKYVNGKPLYTGLAERREQRQQRLQQRF 129
+ + GK +Y G RR +R + ++
Sbjct 232 NGMLIGGKTVYVGPFIRRAERDNLAEAKY 260
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 21/124 (16%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDD-KLRELFERFGP 65
++VGP RA+R KY N+Y+KN+ ++ +D+ +LRE F +FG
Sbjct 241 VYVGPFIRRAERDNLAEAKY-------------TNVYIKNMPSAWEDESRLRETFSKFGS 287
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLY-----TGLAERREQ 120
+S+ V +D KG + F F F D A AV ++ K V +G E+ E+
Sbjct 288 ITSLVVRKDPKG--RLFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEEE 345
Query 121 RQQR 124
Q+R
Sbjct 346 GQKR 349
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASKAVAD 99
+LYV +L V + L E+F GP +S++V RD S G+ +V + DA +++
Sbjct 84 SLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDT 143
Query 100 MHLKYVNGKP 109
++ + G+P
Sbjct 144 LNYTVIKGQP 153
> pfa:PFL1170w polyadenylate-binding protein, putative; K13126
polyadenylate-binding protein
Length=875
Score = 168 bits (425), Expect = 5e-42, Method: Composition-based stats.
Identities = 81/126 (64%), Positives = 100/126 (79%), Gaps = 0/126 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
IL+VGPHQSRA+R A L+ K++ E +++GVNLY+KNLD+ +DD LRELFE FG
Sbjct 416 ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT 475
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVMRDEK SKGFGFVCF S ++A+KAV +MHLK +NGKPLY GLAE+REQR RL
Sbjct 476 ITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRL 535
Query 126 QQRFRL 131
QQRFR+
Sbjct 536 QQRFRM 541
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 0/81 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N++VKNLD S+D+ L + F FG S KV DE G SK +GFV + + A +A+ +
Sbjct 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query 101 HLKYVNGKPLYTGLAERREQR 121
+ + K +Y G ++ +R
Sbjct 165 NGVQLGSKNVYVGPFIKKSER 185
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
NLYVKN +SV + LR+LF +G +S+ V D K ++ F F+ + + A A+ ++
Sbjct 194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNL 251
Query 101 HLKYV 105
+ K +
Sbjct 252 NGKKI 256
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDE-KGVSKGFGFVCFVSPDDASK 95
+ +LYV +L+ V + L E+F G SS++V RD S G+ +V + + DA +
Sbjct 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query 96 AVADMHLKYVNGKP 109
A+ ++ + G+P
Sbjct 73 ALDTLNYTNIKGQP 86
> cpv:cgd6_3010 poly(a)-binding protein fabm ; K13126 polyadenylate-binding
protein
Length=746
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 91/124 (73%), Gaps = 1/124 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
L+V Q + +R L+ ++E + E +RY+GVNLYVKNL +S++++ LR +FE FG
Sbjct 331 LYVSRAQKKNERQVVLKSQHEAVK-ESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTV 389
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SSV + DE GVS+GFGFV F+SPD+A+KA+ +MHLK V GKPLY GL ER+EQR RLQ
Sbjct 390 SSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQ 449
Query 127 QRFR 130
QR R
Sbjct 450 QRIR 453
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 0/81 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N++VKNLD S+D+ L + F FG S K+ D +G S G+GF+ F D A +A++ +
Sbjct 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRL 160
Query 101 HLKYVNGKPLYTGLAERREQR 121
+ + +P+Y G +++ +R
Sbjct 161 NGAVLGDRPIYVGKFQKKAER 181
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query 23 RMKYEQQQQERGERYRG-----VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG 77
R Y + Q++ ER+ N+YVK++ S +D L ++F +G SS+ + D KG
Sbjct 168 RPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG 227
Query 78 VSKGFGFVCFVSPDDASKAVADMHLKYV 105
+ FGFV F +PD A AVA +H V
Sbjct 228 --RPFGFVNFENPDSAKAAVAALHNALV 253
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query 40 VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASKAVA 98
+LYV +LD V + L E+F SSV++ RD S G+ +V + S DA +A+
Sbjct 12 ASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALD 71
Query 99 DMHLKYVNGKP 109
++ + G+P
Sbjct 72 TLNFTCIRGRP 82
> hsa:8761 PABPC4, APP-1, APP1, FLJ43938, PABP4, iPABP; poly(A)
binding protein, cytoplasmic 4 (inducible form); K13126 polyadenylate-binding
protein
Length=660
Score = 137 bits (345), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
I+FVG Q + +R A L+ K+EQ +QER RY+GVNLY+KNLD+++DD+KLR+ F FG
Sbjct 260 IIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+R+ L
Sbjct 320 ITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 378
Query 126 QQRF 129
++
Sbjct 379 TNQY 382
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG +SR +R A L K ++ N+Y+KN VDD+ L+ELF +FG T
Sbjct 168 VFVGRFKSRKEREAELGAKAKE----------FTNVYIKNFGEEVDDESLKELFSQFGKT 217
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SVKVMRD G SKGFGFV + +DA+KAV +M+ K ++GK ++ G A+++ +RQ L+
Sbjct 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Query 127 QRF 129
++F
Sbjct 278 RKF 280
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+ FV F
Sbjct 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+ + A KA+ M+ +N + ++ G + R++R+ L
Sbjct 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDASK 95
Y +LYV +L + V + L E F GP S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + GKP+ ++R
Sbjct 68 ALDTMNFDVIKGKPIRIMWSQR 89
> xla:444284 pabpc4, MGC80927, PABP, ePAB, ePABP; poly(A) binding
protein, cytoplasmic 4 (inducible form); K13126 polyadenylate-binding
protein
Length=626
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 93/124 (75%), Gaps = 1/124 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
I+FVG Q + +R A L+ ++EQ +QER RY+GVNLY+KNLD+++DD+KLR+ F FG
Sbjct 260 IMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVM +E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+R+ L
Sbjct 320 ITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHL 378
Query 126 QQRF 129
++
Sbjct 379 TNQY 382
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 10/123 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG + R +R A L K ++ N+Y+KN +DD++L+E F ++G T
Sbjct 168 VFVGRFKCRREREAELGAKAKE----------FTNVYIKNFGEDMDDERLKETFSKYGKT 217
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SVKVM D G SKGFGFV F +DA+KAV DM+ K VNGK ++ G A+++ +RQ L+
Sbjct 218 LSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELK 277
Query 127 QRF 129
+RF
Sbjct 278 RRF 280
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+ FV F
Sbjct 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+ D A +A+ M+ +N + ++ G + R +R+ L
Sbjct 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAEL 183
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDASK 95
Y +LYV +L V + L E F GP S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + GKP+ ++R
Sbjct 68 ALDTMNFDVIKGKPIRIMWSQR 89
> mmu:381404 Pabpc1l, 1810053B01Rik, Epab; poly(A) binding protein,
cytoplasmic 1-like; K13126 polyadenylate-binding protein
Length=607
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
+L+VG Q RA+R + L+ ++EQ +QER RY+GVNLYVKNLD+S++D++L+E+F +G
Sbjct 260 LLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGV 319
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVM E SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+R+ L
Sbjct 320 ITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAIL 378
Query 126 QQRFR 130
++R
Sbjct 379 TNQYR 383
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRG-VNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR +R A L G R G N+YVKNL +VD+ +L++LF +FG
Sbjct 168 VFVGHFKSRQKREAEL-----------GARALGFTNIYVKNLHANVDEQRLQDLFSQFGN 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SVKVMRD G S+GFGFV F ++A KAV M+ K V+G+ LY G A++R +RQ L
Sbjct 217 MQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSEL 276
Query 126 QQRF 129
++RF
Sbjct 277 KRRF 280
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNL+NS+D+ L + F FG S KV+ +E G S+GFGFV F + + A KA+ M
Sbjct 100 NIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTM 158
Query 101 HLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ +N + ++ G + R++R+ L R
Sbjct 159 NGMLLNDRKVFVGHFKSRQKREAELGAR 186
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDASKAVAD 99
+LYV +L V + L E+F G S++V RD S G+ ++ F P DA +A+
Sbjct 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query 100 MHLKYVNGKPL 110
M+ + + G+P+
Sbjct 72 MNFEVIKGQPI 82
> dre:321035 pabpc4, cb12, sb:cb12; poly(A) binding protein, cytoplasmic
4 (inducible form); K13126 polyadenylate-binding
protein
Length=637
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 92/123 (74%), Gaps = 1/123 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG Q + +R A L+ K+EQ +QER RY+GVNLY+KNLD+++DD+KLR+ F FG
Sbjct 262 VFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 321
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVM +E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+R+ L
Sbjct 322 TSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLT 380
Query 127 QRF 129
++
Sbjct 381 NQY 383
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG +SR +R A + K ++ N+Y+KN + +DD +L+ELF+++G T
Sbjct 169 VFVGRFKSRKEREAEMGAKAKE----------FTNVYIKNFGDDMDDQRLKELFDKYGKT 218
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SVKVM D G S+GFGFV + +DA+KAV +M+ +NGK ++ G A+++ +RQ L+
Sbjct 219 LSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELK 278
Query 127 QRF 129
++F
Sbjct 279 RKF 281
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+ FV F
Sbjct 89 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 147
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+ D A +A+ M+ +N + ++ G + R++R+ +
Sbjct 148 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEM 184
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDASK 95
Y +LYV +L + + L E F GP S++V RD S G+ +V F P DA +
Sbjct 9 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 68
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ V GKP+ ++R
Sbjct 69 ALDTMNFDVVKGKPIRIMWSQR 90
> mmu:230721 Pabpc4, MGC11665, MGC6685; poly(A) binding protein,
cytoplasmic 4; K13126 polyadenylate-binding protein
Length=660
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG Q + +R A L+ K+EQ +QER RY+GVNLY+KNLD+++DD+KLR F FG
Sbjct 261 IFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSI 320
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+R+ L
Sbjct 321 TSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLT 379
Query 127 QRF 129
++
Sbjct 380 NQY 382
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 10/123 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG +SR +R A L K ++ N+Y+KN VDD L+ELF +FG T
Sbjct 168 VFVGRFKSRKEREAELGAKAKEF----------TNVYIKNFGEEVDDGNLKELFSQFGKT 217
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SVKVMRD G SKGFGFV + +DA+KAV +M+ K ++GK ++ G A+++ +RQ L+
Sbjct 218 LSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELK 277
Query 127 QRF 129
++F
Sbjct 278 RKF 280
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+ FV F
Sbjct 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+ + A KA+ M+ +N + ++ G + R++R+ L
Sbjct 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASK 95
Y +LYV +L + V + L E F GP S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + GKP+ ++R
Sbjct 68 ALDTMNFDVMKGKPIRIMWSQR 89
> dre:327625 pabpc1l, fi20g03, pab-2, wu:fi20g03, zgc:55855; poly(A)
binding protein, cytoplasmic 1-like; K13126 polyadenylate-binding
protein
Length=620
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 93/124 (75%), Gaps = 1/124 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
+L+VG Q R +R L+ K+EQ +QER +RY+GVNLYVKNLD+S+DD+KLR+ F +G
Sbjct 260 VLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGT 319
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVM D G S+GFGFVCF SP++A+KAV +M+ + V+ KPLY LA+R+E+R+ L
Sbjct 320 ITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAIL 378
Query 126 QQRF 129
++
Sbjct 379 TNQY 382
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 10/123 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG +SR +R A + K + N+Y+KN +D +KL+ +F FG T
Sbjct 168 VFVGHFKSRKEREAEMGAKAVE----------FTNVYIKNFGEDIDSEKLKNIFTEFGKT 217
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SV VM DE+G S+GFGFV FV+ DA +AV +M+ K +NG+ LY G A++R +RQ L+
Sbjct 218 LSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELK 277
Query 127 QRF 129
++F
Sbjct 278 RKF 280
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ G R GV N+++KN+D S+D+ L + F FG S KV+ DE G SKG+GFV F
Sbjct 88 QRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+ + A++A+ M+ +N + ++ G + R++R+ +
Sbjct 147 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEM 183
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query 34 GERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDD 92
G Y +LYV +L V + L + F G S++V RD S G+ ++ F P D
Sbjct 5 GPAYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPAD 64
Query 93 ASKAVADMHLKYVNGKPLYTGLAER 117
A A+ M+ + + G+P+ ++R
Sbjct 65 AECALDTMNYEVIKGRPIRIMWSQR 89
> dre:393856 pabpc1b, MGC77608, pabpc1, zgc:77608; poly A binding
protein, cytoplasmic 1 b; K13126 polyadenylate-binding protein
Length=634
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
+++VG Q + +R L+ K+EQ +Q+R RY+GVNLYVKNLD+ +DD++LR+ F FG
Sbjct 260 LIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVM D G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+RQ L
Sbjct 320 ITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 378
Query 126 QQRF 129
++
Sbjct 379 TNQY 382
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRG-VNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR +R A L G R + N+Y+KN +DDDKL+++F ++G
Sbjct 168 VFVGRFKSRKEREAEL-----------GARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGN 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
S++VM DE G S+GFGFV F +DA +AV +M+ K +NGK +Y G A+++ +RQ L
Sbjct 217 AMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTEL 276
Query 126 QQRF 129
+++F
Sbjct 277 KRKF 280
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+GFV F
Sbjct 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ + A +A+ M+ +N + ++ G + R++R+ L R
Sbjct 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDASK 95
Y +LYV +L V + L E F G S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + G+P+ ++R
Sbjct 68 ALDTMNFDVIKGRPVRIMWSQR 89
> xla:443777 pabpc1l-b, MGC81363, epab, epabp-b, pabpc1l1; poly(A)
binding protein, cytoplasmic 1-like; K13126 polyadenylate-binding
protein
Length=629
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 91/124 (73%), Gaps = 1/124 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
+++VG Q R +R L+ K+EQ +QER RY+GVNLYVKNLD+ +DDD+LR+ F +G
Sbjct 260 MVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGT 319
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V+ KPLY LA+R+E+R+ L
Sbjct 320 ITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAIL 378
Query 126 QQRF 129
++
Sbjct 379 TNQY 382
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 10/123 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG +SR +R ++Y + E N+Y+KN +DD +L+E+F FG T
Sbjct 168 VFVGHFKSRRER----ELEYGAKVMEF------TNVYIKNFGEDMDDKRLKEIFSAFGNT 217
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SVKVM D G S+GFGFV + + ++A KAV +M+ K VNG+ +Y G A++R +RQ L+
Sbjct 218 LSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELK 277
Query 127 QRF 129
++F
Sbjct 278 RKF 280
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ G R GV N+++KNLD+S+D+ L + F FG S KV+ DE G S+G+GFV F
Sbjct 88 QRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQ 122
+ + A++A+ M+ +N + ++ G + R +R+
Sbjct 147 TQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERE 180
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRD-EKGVSKGFGFVCFVSPDDASK 95
Y +LY+ +L V + L E F GP S++V RD S G+ ++ F P DA +
Sbjct 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + + G+P+ ++R
Sbjct 68 ALDTMNFEVIKGRPIRIMWSQR 89
> xla:432140 pabpc1-b, MGC130736, MGC79060, pab1, pabp, pabp1,
pabpc2; poly(A) binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=633
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG Q + +R L+ K+EQ +Q+R RY+GVNLYVKNLD+ +DD++LR+ F FG
Sbjct 261 IFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSI 320
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+RQ L
Sbjct 321 TSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLT 379
Query 127 QRF 129
++
Sbjct 380 NQY 382
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 77/124 (62%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRG-VNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR +R A L G R + N+Y+KN +DD++L+E F ++G
Sbjct 168 VFVGRFKSRKEREAEL-----------GARAKEFTNVYIKNFGEDMDDERLKEWFGQYGA 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SVKVM D+ G S+GFGFV F +DA KAV DM+ K +NGK ++ G A+++ +RQ L
Sbjct 217 ALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTEL 276
Query 126 QQRF 129
+++F
Sbjct 277 KRKF 280
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+GFV F
Sbjct 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ + A +A+ M+ +N + ++ G + R++R+ L R
Sbjct 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDASK 95
Y +LYV +L V + L E F GP S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + GKP+ ++R
Sbjct 68 ALDTMNFDVIKGKPVRIMWSQR 89
> xla:398221 pabpc1l-a, MGC82273, ePAB, epabp-a, pabpc1l1; poly(A)
binding protein, cytoplasmic 1-like; K13126 polyadenylate-binding
protein
Length=629
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
+++VG Q R +R + L+ K+EQ +QER RY+GVNLYVKNLD+ +DDD+LR+ F +G
Sbjct 260 MIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGT 319
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V+ KPLY LA+R+E+R+ L
Sbjct 320 ITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAIL 378
Query 126 QQRF 129
++
Sbjct 379 TNQY 382
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG +SR +R ++Y + E N+Y+KN +DD +LRE+F FG T
Sbjct 168 VFVGHFKSRRER----ELEYGAKVMEF------TNVYIKNFGEDMDDKRLREIFSAFGNT 217
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SVKVM D+ G S+GFGFV + + ++A KAV++M+ K VNG+ +Y G A++R +RQ L+
Sbjct 218 LSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELK 277
Query 127 QRF 129
++F
Sbjct 278 RKF 280
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ G R GV N+++KNLD S+D+ L + F FG S KV+ DE G S+G+GFV F
Sbjct 88 QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQ 122
+ + A++A+ M+ +N + ++ G + R +R+
Sbjct 147 THEAANRAIQTMNGMLLNDRKVFVGHFKSRRERE 180
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query 34 GERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRD-EKGVSKGFGFVCFVSPDD 92
G Y +LY+ +L V + L E F GP S++V RD S + ++ F P D
Sbjct 5 GAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPAD 64
Query 93 ASKAVADMHLKYVNGKPLYTGLAER 117
A +A+ M+ + + G+P+ ++R
Sbjct 65 AERALDTMNFEVIKGRPIRIMWSQR 89
> mmu:18458 Pabpc1, PABP, Pabp1, PabpI, Pabpl1, ePAB; poly(A)
binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=636
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++VG Q + +R L+ K+EQ +Q+R RY+GVNLYVKNLD+ +DD++LR+ F FG
Sbjct 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 320
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+RQ L
Sbjct 321 TSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLT 379
Query 127 QRF 129
++
Sbjct 380 NQY 382
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRG-VNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR +R A L G R + N+Y+KN +DD++L+ELF +FGP
Sbjct 168 VFVGRFKSRKEREAEL-----------GARAKEFTNVYIKNFGEDMDDERLKELFGKFGP 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SVKVM DE G SKGFGFV F +DA KAV +M+ K +NGK +Y G A+++ +RQ L
Sbjct 217 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Query 126 QQRF 129
+++F
Sbjct 277 KRKF 280
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+GFV F
Sbjct 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ + A +A+ M+ +N + ++ G + R++R+ L R
Sbjct 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDASK 95
Y +LYV +L V + L E F GP S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + GKP+ ++R
Sbjct 68 ALDTMNFDVIKGKPVRIMWSQR 89
> hsa:26986 PABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1; poly(A)
binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=636
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++VG Q + +R L+ K+EQ +Q+R RY+GVNLYVKNLD+ +DD++LR+ F FG
Sbjct 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 320
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+RQ L
Sbjct 321 TSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLT 379
Query 127 QRF 129
++
Sbjct 380 NQY 382
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 79/124 (63%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRG-VNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR +R A L G R + N+Y+KN +DD++L++LF +FGP
Sbjct 168 VFVGRFKSRKEREAEL-----------GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGP 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SVKVM DE G SKGFGFV F +DA KAV +M+ K +NGK +Y G A+++ +RQ L
Sbjct 217 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Query 126 QQRF 129
+++F
Sbjct 277 KRKF 280
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+GFV F
Sbjct 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ + A +A+ M+ +N + ++ G + R++R+ L R
Sbjct 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDASK 95
Y +LYV +L V + L E F GP S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + GKP+ ++R
Sbjct 68 ALDTMNFDVIKGKPVRIMWSQR 89
> bbo:BBOV_IV008280 23.m06515; polyadenylate binding protein;
K13126 polyadenylate-binding protein
Length=585
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 94/129 (72%), Gaps = 0/129 (0%)
Query 2 SDEMILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFE 61
S E + V H +A+R A L+ +Y+ Q++ ++ GVNLY+KNLD+ DDD LR+LF+
Sbjct 279 SVEEPMMVCQHMDKARRYAMLKAQYDSNAQDQRNKFMGVNLYIKNLDDDFDDDGLRDLFK 338
Query 62 RFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQR 121
++G +S KVMRD GVS+GFGFVCF PD+A+KAVA MHLK V KPLY GLAE+REQR
Sbjct 339 QYGTVTSSKVMRDHNGVSRGFGFVCFSRPDEATKAVAGMHLKLVKNKPLYVGLAEKREQR 398
Query 122 QQRLQQRFR 130
R+QQR R
Sbjct 399 ASRMQQRNR 407
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 0/89 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N++VKNLD ++D L + F FG S KV D G SKG+GFV + + + A +A+ +
Sbjct 125 NIFVKNLDKAIDTKALYDTFSHFGTILSCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKV 184
Query 101 HLKYVNGKPLYTGLAERREQRQQRLQQRF 129
+ + + RR +R + F
Sbjct 185 NGMLIGNSQVSVAPFLRRNERTSTVGDVF 213
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query 29 QQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCF 87
Q Q + +LYV NL V + L E+F GP +S++V RD S G+ +V +
Sbjct 25 QGQPARSSFNSASLYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNY 84
Query 88 VSPDDASKAVADMHLKYVNGKPLYTGLAER 117
+ DA A+ ++ + G+P +ER
Sbjct 85 YNFQDAEAALECLNYIEIKGQPARIMWSER 114
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query 40 VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAV 97
NLYV+N ++ +D L + F ++G +S+ + D+KG + F FV FV + A A+
Sbjct 214 TNLYVRNFPDTWTEDDLHQTFSKYGEITSLLLKSDDKG--RRFAFVNFVDTNMAKAAM 269
> xla:379896 pabpc1-a, MGC53109, pab1, pabp, pabp1, pabpc1, pabpc2;
poly(A) binding protein, cytoplasmic 1; K13126 polyadenylate-binding
protein
Length=633
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG Q + +R L+ K+EQ Q+R RY+GVNLYVKNLD+ +DD++LR+ F FG
Sbjct 261 MFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTI 320
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+RQ L
Sbjct 321 TSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLT 379
Query 127 QRF 129
++
Sbjct 380 NQY 382
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 80/124 (64%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRG-VNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR +R A L G R + N+Y+KN + ++D++L+E+F ++GP
Sbjct 168 VFVGRFKSRKEREAEL-----------GARAKEFTNVYIKNFGDDMNDERLKEMFGKYGP 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SVKVM D+ G SKGFGFV F +DA KAV +M+ K +NGK ++ G A+++ +RQ L
Sbjct 217 ALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTEL 276
Query 126 QQRF 129
+++F
Sbjct 277 KRKF 280
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+GFV F
Sbjct 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ + A +A+ M+ +N + ++ G + R++R+ L R
Sbjct 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASK 95
Y +LYV +L V + L E F GP S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + G+P+ ++R
Sbjct 68 ALDTMNFDVIKGRPVRIMWSQR 89
> hsa:80336 PABPC1L, C20orf119, FLJ11840, FLJ30809, FLJ42053,
PABPC1L1, dJ1069P2.3, ePAB; poly(A) binding protein, cytoplasmic
1-like; K13126 polyadenylate-binding protein
Length=614
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
+L+ G Q R +R L+ ++EQ +Q+R RY+GVNLYVKNLD+S+DDDKLR+ F +G
Sbjct 260 LLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGV 319
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+R+ L
Sbjct 320 ITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAIL 378
Query 126 QQRF 129
++
Sbjct 379 TNQY 382
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 74/124 (59%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGER-YRGVNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR +R A E G R N+YVKNL VD+ L++LF +FG
Sbjct 168 VFVGHFKSRREREA-----------ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGK 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SVKVMRD G S+ FGFV F ++A KAV M+ K V+G+ LY G A++R +RQ L
Sbjct 217 MLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL 276
Query 126 QQRF 129
++RF
Sbjct 277 KRRF 280
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ G R GV N+++KNL++S+D+ L + F FG S KV DE G S+GFGFV F
Sbjct 88 QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ + A +A+ M+ +N + ++ G + R +R+ L R
Sbjct 147 THEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query 34 GERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDD 92
G Y +LYV +L V + L E F GP S++V RD S G+ ++ F P D
Sbjct 5 GSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query 93 ASKAVADMHLKYVNGKPLYTGLAER 117
A +A+ M+ + + G+P+ ++R
Sbjct 65 AERALDTMNFEMLKGQPIRIMWSQR 89
> ath:AT1G49760 PAB8; PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding
/ translation initiation factor; K13126 polyadenylate-binding
protein
Length=671
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 88/127 (69%), Gaps = 0/127 (0%)
Query 3 DEMILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFER 62
D+ FVG Q +++R L+ K+EQ +E ++ +G NLYVKNLD SV DDKLRE F
Sbjct 290 DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAP 349
Query 63 FGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQ 122
FG +S KVMRD GVS+G GFV F +P++A++A+ +M+ K + KPLY LA+R+E R+
Sbjct 350 FGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRK 409
Query 123 QRLQQRF 129
RLQ +F
Sbjct 410 ARLQAQF 416
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 12/123 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++VGP + QR + GE+ + N+YVKNL S+ D++L ++F FG T
Sbjct 203 VYVGPFVHKLQRDPS------------GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S +MRD +G SKGFGFV F + DDA++AV ++ K + K + G A+++ +R+ L+
Sbjct 251 TSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELK 310
Query 127 QRF 129
Q+F
Sbjct 311 QKF 313
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query 36 RYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDAS 94
R GV N+++KNLD S+D L E F FGP S KV D G SKG+GFV + + + A
Sbjct 128 RKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQ 187
Query 95 KAVADMHLKYVNGKPLYTGLAERREQR 121
A+ ++ +N K +Y G + QR
Sbjct 188 GAIDKLNGMLLNDKQVYVGPFVHKLQR 214
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query 40 VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASKAVA 98
+LYV +LD +V D +L E F + G SV+V RD S G+G+V + +P DAS+A+
Sbjct 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query 99 DMHLKYVNGKPL 110
+++ +NG+ +
Sbjct 105 ELNFMALNGRAI 116
> cel:Y106G6H.2 pab-1; PolyA Binding protein family member (pab-1);
K13126 polyadenylate-binding protein
Length=583
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 90/126 (71%), Gaps = 0/126 (0%)
Query 4 EMILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERF 63
++ L V Q +++R A L+ K+EQ + ER ++Y+GVNLYVKNLD +VDDD L++ FE +
Sbjct 218 DLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESY 277
Query 64 GPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQ 123
G +S KVM DE G SKGFGFVCF P++A+ AV +M+ K V KPLY +A+R+E R+
Sbjct 278 GNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRA 337
Query 124 RLQQRF 129
+L ++
Sbjct 338 QLASQY 343
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 15/125 (12%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRG-VNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG Q RAQR +E GE + N+YVKN + + + L +LF +FG
Sbjct 127 VFVGKFQPRAQRN-----------RELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGN 175
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGK--PLYTGLAERREQRQQ 123
+S +VM E G SKGFGFV F +P++A AV +H + G L+ A+++ +R
Sbjct 176 ITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHA 234
Query 124 RLQQR 128
L+++
Sbjct 235 ELKKK 239
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 0/85 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNLD +D+ + + F FG S KV DE G SKG+GFV F + + A A+ +
Sbjct 58 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKV 117
Query 101 HLKYVNGKPLYTGLAERREQRQQRL 125
+ + GK ++ G + R QR + L
Sbjct 118 NGMLLAGKKVFVGKFQPRAQRNREL 142
> dre:606498 pabpc1a, pabpc1, wu:fb16a02, wu:fi19b08, wu:fj12d09,
wu:fj61f06, zgc:109879; poly A binding protein, cytoplasmic
1 a; K13126 polyadenylate-binding protein
Length=634
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++VG Q + +R L+ K+EQ +Q+R RY+GVNLYVKNLD+ +DD++LR+ F FG
Sbjct 261 VYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTI 320
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+RQ L
Sbjct 321 TSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLT 379
Query 127 QRF 129
++
Sbjct 380 SQY 382
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 79/124 (63%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRG-VNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR +R A E G R + N+Y+KN +DD+KL+E+F ++GP
Sbjct 168 VFVGRFKSRKEREA-----------EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGP 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
S++VM D+ G SKGFGFV F +DA +AV +M+ K +NGK +Y G A+++ +RQ L
Sbjct 217 ALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTEL 276
Query 126 QQRF 129
+++F
Sbjct 277 KRKF 280
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+GFV F
Sbjct 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ + A +A+ M+ +N + ++ G + R++R+ + R
Sbjct 147 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAR 186
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDASK 95
Y +LYV +L V + L E F GP S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + G+P+ ++R
Sbjct 68 ALDTMNFDVIKGRPVRIMWSQR 89
> cel:F18H3.3 pab-2; PolyA Binding protein family member (pab-2);
K13126 polyadenylate-binding protein
Length=566
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 85/117 (72%), Gaps = 0/117 (0%)
Query 13 QSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVM 72
Q +++R+A L+ KYE +QER +RY+GVNLYVKN++ ++DD LR+ F FG +S KVM
Sbjct 316 QKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVM 375
Query 73 RDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQRF 129
DE G SKGFGFVCF P++A+ AV DM+ K + KPLY LA+R+E R+ +L ++
Sbjct 376 VDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQY 432
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++VG Q RAQR L E G +Y N++VKN +D +KL +F +FG
Sbjct 215 VYVGKFQPRAQRMKELG--------ESGLKY--TNVFVKNFGEHLDQEKLSAMFSKFGEI 264
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGK--PLYTGLAERREQRQQR 124
+S VM D +G KGFGFV F D A +AV ++ + G L A+++ +R
Sbjct 265 TSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAE 324
Query 125 LQQRF 129
L++++
Sbjct 325 LKRKY 329
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 0/85 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNLD +D+ + + F FG S KV D++G SKG+GFV F + A A+ +
Sbjct 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKV 205
Query 101 HLKYVNGKPLYTGLAERREQRQQRL 125
+ ++ K +Y G + R QR + L
Sbjct 206 NGMLLSDKKVYVGKFQPRAQRMKEL 230
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASK 95
Y +LY+ +L V + L E F GP S++V RD +S G+ +V F P DA +
Sbjct 54 YSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 113
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + ++G+P+ ++R
Sbjct 114 ALDTMNFEVIHGRPMRIMWSQR 135
> ath:AT2G23350 PAB4; PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding
/ translation initiation factor
Length=662
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 87/127 (68%), Gaps = 0/127 (0%)
Query 3 DEMILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFER 62
D+ +VG Q +++R L +YEQ + G ++ G+NLYVKNLD++V D+KLRELF
Sbjct 291 DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAE 350
Query 63 FGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQ 122
FG +S KVMRD G SKG GFV F + +AS+ + +M+ K V GKPLY LA+R+E+R+
Sbjct 351 FGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERR 410
Query 123 QRLQQRF 129
+LQ +F
Sbjct 411 AKLQAQF 417
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 14/124 (11%)
Query 7 LFVGPHQSRAQR-TAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
+FVGP + +R +AA +MK+ N+YVKNL + DD+L+ F ++G
Sbjct 204 IFVGPFLRKEERESAADKMKF-------------TNVYVKNLSEATTDDELKTTFGQYGS 250
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SS VMRD G S+ FGFV F +P+DA++AV ++ K + K Y G A+++ +R+ L
Sbjct 251 ISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 310
Query 126 QQRF 129
+R+
Sbjct 311 SRRY 314
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 0/82 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
NL+VKNLD SVD+ L E F G S KV D G S+G+GFV F + D A A+ +
Sbjct 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query 101 HLKYVNGKPLYTGLAERREQRQ 122
+ K +N K ++ G R+E+R+
Sbjct 195 NGKVLNDKQIFVGPFLRKEERE 216
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query 40 VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDE-KGVSKGFGFVCFVSPDDASKAVA 98
+LYV +LD +V D +L + F SV+V RD S G+G+V + + DDA KA+
Sbjct 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query 99 DMHLKYVNGK 108
++ Y+NGK
Sbjct 106 KLNYSYLNGK 115
> sce:YER165W PAB1; Pab1p; K13126 polyadenylate-binding protein
Length=577
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 89/124 (71%), Gaps = 0/124 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
L+VG Q + +R L+ +YE + E+ +Y+GVNL+VKNLD+SVDD+KL E F +G
Sbjct 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTI 348
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVMR E G SKGFGFVCF +P++A+KA+ + + + V GKPLY +A+R++ R+ +L
Sbjct 349 TSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLA 408
Query 127 QRFR 130
Q+ +
Sbjct 409 QQIQ 412
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 10/123 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++V PH SR +R + L +E Y NLYVKN+++ D++ +ELF +FGP
Sbjct 196 IYVAPHLSRKERDSQL--------EETKAHY--TNLYVKNINSETTDEQFQELFAKFGPI 245
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
S + +D G KGFGFV + +DA KAV ++ +NG+ LY G A+++ +R L+
Sbjct 246 VSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 305
Query 127 QRF 129
+++
Sbjct 306 KQY 308
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 0/87 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNL +D+ L + F FG S K+ DE G SKGFGFV F A +A+ +
Sbjct 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query 101 HLKYVNGKPLYTGLAERREQRQQRLQQ 127
+ +NG+ +Y R++R +L++
Sbjct 187 NGMLLNGQEIYVAPHLSRKERDSQLEE 213
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query 16 AQRTAALRMKYEQQQQERGERYRGV-----NLYVKNLDNSVDDDKLRELFERFGPTSSVK 70
A++ L ++ +Q+Q G + V +LYV +L+ SV + L ++F G SS++
Sbjct 9 AEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68
Query 71 VMRDE-KGVSKGFGFVCFVSPDDASKAVADMHLKYVNGK 108
V RD S G+ +V F + KA+ ++ + G+
Sbjct 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGR 107
> mmu:18459 Pabpc2, PABP, PABP+, Pabp2; poly(A) binding protein,
cytoplasmic 2; K13126 polyadenylate-binding protein
Length=628
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++VG Q + R L+ K+EQ Q++ RY+G+NLYVKNLD+ +DD++L++ F FG
Sbjct 261 IYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTI 320
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVM E G SKGFGFVCF SP++A+KAV++M+ + V KPLY LA+R+E+RQ L
Sbjct 321 TSTKVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLT 379
Query 127 QRF 129
++
Sbjct 380 NQY 382
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 4/109 (3%)
Query 25 KYEQQQQERGERYRGV----NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSK 80
+++ Q++ E G N+Y+KN + +DD+ L LF RFG SVKVM DE G SK
Sbjct 172 RFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSK 231
Query 81 GFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQRF 129
GFGFV F +DA KAV +M+ K +NGK +Y G A++++ R L+ +F
Sbjct 232 GFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKF 280
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N+++KNL+ ++D+ L + F FG S KV+ DE G SKG GFV F
Sbjct 88 QRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+ + A +A+ M+ +N + ++ G + +++R+ L
Sbjct 147 TEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAEL 183
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query 40 VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASKAVA 98
+LYV +L V + L E F GP S++V RD S G+ V F P DA +A+
Sbjct 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query 99 DMHLKYVNGKPLYTGLAER 117
M+ + GKP+ ++R
Sbjct 71 TMNFDVIKGKPVRIMWSQR 89
> hsa:5042 PABPC3, PABP3, PABPL3, tPABP; poly(A) binding protein,
cytoplasmic 3; K13126 polyadenylate-binding protein
Length=631
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++VG Q + +R L+ +EQ +Q+R RY+ VNLYVKNLD+ +DD++LR+ F FG
Sbjct 261 IYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTI 320
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
+S KVM E G SKGFGFVCF SP++A+KAV +M+ + V KPLY LA+R+E+RQ L
Sbjct 321 TSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLT 379
Query 127 QRF 129
+
Sbjct 380 NEY 382
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR +R A L G R + N+Y+KN +DD++L++LF +FGP
Sbjct 168 VFVGQFKSRKEREAEL-----------GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGP 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SVKVM DE G SKGFGFV F +DA KAV +M+ K +NGK +Y G A+++ +RQ L
Sbjct 217 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Query 126 QQRF 129
++ F
Sbjct 277 KRTF 280
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N++VKNLD S+++ L + FG S V+ DE G SKG+GFV F
Sbjct 88 QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ + A +A+ M+ +NG+ ++ G + R++R+ L R
Sbjct 147 THEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRD-EKGVSKGFGFVCFVSPDDASK 95
Y +LYV +L V + L E F GP S+++ RD S + +V F DA
Sbjct 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + GKP+ ++R
Sbjct 68 ALDTMNFDVIKGKPVRIMWSQR 89
> ath:AT4G34110 PAB2; PAB2 (POLY(A) BINDING 2); RNA binding /
translation initiation factor; K13126 polyadenylate-binding
protein
Length=629
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 88/127 (69%), Gaps = 0/127 (0%)
Query 3 DEMILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFER 62
D+ +VG Q +++R LR++YEQ +E ++++ NLYVKNLD S+ D+KL+E+F
Sbjct 281 DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSP 340
Query 63 FGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQ 122
FG +S KVMRD G SKG GFV F +P++A++A++ + K + KPLY +A+R+E R+
Sbjct 341 FGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR 400
Query 123 QRLQQRF 129
RLQ +F
Sbjct 401 VRLQAQF 407
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 0/102 (0%)
Query 28 QQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCF 87
Q++ + + N+YVKNL S DD L+ F +G +S VM+D +G SKGFGFV F
Sbjct 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262
Query 88 VSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQRF 129
+ DDA++AV ++ + K Y G A+++ +R+ L+ R+
Sbjct 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRY 304
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 0/81 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNLD S+D L + F FG S KV D G SKG+GFV + + + A KA+ +
Sbjct 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query 101 HLKYVNGKPLYTGLAERREQR 121
+ +N K +Y G RR++R
Sbjct 185 NGMLLNDKQVYVGPFLRRQER 205
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query 13 QSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVM 72
Q+ TAA+ ++ +LYV +LD +V D +L + F + G +V+V
Sbjct 9 QTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVC 68
Query 73 RD-EKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPL 110
RD S G+G+V F +P DA++A+ +++ + GKP+
Sbjct 69 RDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPI 107
> tpv:TP01_0945 polyadenylate binding protein; K13126 polyadenylate-binding
protein
Length=661
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 77/113 (68%), Gaps = 0/113 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
L V PHQ +A+R LR ++ + ++ NLY+KNLD+S DD+ L ELF+ FG
Sbjct 273 LLVCPHQDKAKRQNLLRAQFNNSTMAQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTI 332
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERRE 119
+S KVM D S+GFGFVCF +P +A+KA+A MHLK V GKPLY GLAE+R+
Sbjct 333 TSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYVGLAEKRD 385
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 0/82 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N++VKNLD S+D L + F FGP S KV D G SK +GFV + + + A +A+ +
Sbjct 116 NIFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKV 175
Query 101 HLKYVNGKPLYTGLAERREQRQ 122
+ + GK + R++ R+
Sbjct 176 NGMLIGGKRVEVAPFLRKQDRE 197
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query 30 QQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVS 89
+Q+R NLYV+N D++ LR+ E++G +S+ + D KG + F FV +
Sbjct 193 KQDRESEEVFTNLYVRNFPADWDEEALRQFLEKYGEITSMMLKEDSKG--RRFAFVNYKE 250
Query 90 PDDASKAV---ADMHLKYVNGKPLYTGLAERREQRQQRLQQRF 129
P+ A + V D+ L+ + +PL + + +RQ L+ +F
Sbjct 251 PEVAKEVVNTLNDLKLEE-SSEPLLVCPHQDKAKRQNLLRAQF 292
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASK 95
+ +LYV +L V + L E+F GP +S++V RD S G+ +V + S DA +
Sbjct 24 FSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQE 83
Query 96 AVADMHLKYVNGKP 109
A+ +++ + G P
Sbjct 84 ALENLNYIEIKGHP 97
> ath:AT1G22760 PAB3; PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding
/ translation initiation factor
Length=660
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 91/124 (73%), Gaps = 0/124 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
+L+VG Q +++R LR K+EQ++ R E+ +G NLY+KNLD+SVDD+KL+E+F +G
Sbjct 298 VLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGN 357
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S KVM + +G+S+GFGFV + +P++A +A+++M+ K + KPLY LA+R+E R+ L
Sbjct 358 VTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL 417
Query 126 QQRF 129
Q F
Sbjct 418 QALF 421
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 0/103 (0%)
Query 27 EQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVC 86
E+ + E R N+YVKNL + +D+LR+ F +FG SS VMRD+ G S+ FGFV
Sbjct 216 ERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query 87 FVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQRF 129
F + A+ AV M+ + LY G A+++ +R++ L+++F
Sbjct 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKF 318
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 0/81 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNLD S+D+ L E F FG S KV D G SKG+GFV F + A A+ +
Sbjct 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query 101 HLKYVNGKPLYTGLAERREQR 121
+ +N K ++ G RR++R
Sbjct 197 NGMLMNDKQVFVGHFIRRQER 217
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 0/77 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
+LY +LD V + L +LF+ SV+V RD+ S G+ ++ F +P+DA +A+ +
Sbjct 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query 101 HLKYVNGKPLYTGLAER 117
+ + +P+ L+ R
Sbjct 110 NYTPLFDRPIRIMLSNR 126
> ath:AT1G71770 PAB5; PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding
/ poly(A) binding / translation initiation factor
Length=668
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 91/129 (70%), Gaps = 0/129 (0%)
Query 1 SSDEMILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELF 60
S E +L+VG Q ++ R LR K+EQ++ R E+ +G NLY+KNLD+SV+D+KL+E+F
Sbjct 289 SLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMF 348
Query 61 ERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQ 120
+G +S KVM + +G+S+GFGFV + +P++A A+ +M+ K + KPLY LA+R+E+
Sbjct 349 SEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEE 408
Query 121 RQQRLQQRF 129
RQ LQ F
Sbjct 409 RQAHLQSLF 417
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 0/103 (0%)
Query 27 EQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVC 86
++ + E G N+YVKNL + DD+L++ F ++G SS VM+D+ G S+ FGFV
Sbjct 212 DRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVN 271
Query 87 FVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQRF 129
FVSP+ A+ AV M+ + LY G A+++ R++ L+++F
Sbjct 272 FVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKF 314
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 0/81 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNLD S+D+ L E F FG S KV D G SKG+GFV F + A A+ +
Sbjct 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 192
Query 101 HLKYVNGKPLYTGLAERREQR 121
+ +N K ++ G RR+ R
Sbjct 193 NGMLLNDKQVFVGHFVRRQDR 213
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 0/77 (0%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
+LYV +LD SV++ L +LF + P +++V RD S G+ +V F +P+DAS+A+ +
Sbjct 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105
Query 101 HLKYVNGKPLYTGLAER 117
+ + +P+ L+ R
Sbjct 106 NYAPIRDRPIRIMLSNR 122
> mmu:67543 Pabpc6, 4932702K14Rik, AI428050, MGC132900, Pabpc3;
poly(A) binding protein, cytoplasmic 6; K13126 polyadenylate-binding
protein
Length=643
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 86/133 (64%), Gaps = 11/133 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQE----------RGERYRGVNLYVKNLDNSVDDDKL 56
++VG Q + +R L+ K+ Q +Q+ R R +GVNLYVKNLD+ +DD++L
Sbjct 261 IYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERL 320
Query 57 RELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAE 116
R+ F FG +S KV E G SKGFGFVCF SP++A+KAV +M+ K V KPLY LA+
Sbjct 321 RKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQ 379
Query 117 RREQRQQRLQQRF 129
R+E+RQ L ++
Sbjct 380 RKEERQAHLSNQY 392
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 12/124 (9%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRG-VNLYVKNLDNSVDDDKLRELFERFGP 65
+FVG +SR R Q E G R + N+Y+KNL +DD++L++LF RFGP
Sbjct 168 VFVGRFKSRRDR-----------QAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGP 216
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SVKVM DE G SKGFGFV F +DA KAV +M+ K +NGK +Y G A+++ +RQ L
Sbjct 217 ALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTEL 276
Query 126 QQRF 129
+ +F
Sbjct 277 KHKF 280
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query 30 QQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFV 88
Q++ R GV N++VKNLD S+D L + F FG S KV+ DE G SKG+GFV F
Sbjct 88 QRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query 89 SPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQRFR 130
+ ++A +A+ M+ ++N ++ G + R RQ L R +
Sbjct 147 TQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAK 188
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASK 95
Y +LYV +L V + L E F GP S++V RD S G+ V F +DA +
Sbjct 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + GKP+ ++R
Sbjct 68 ALDTMNFDVIKGKPVRIMWSQR 89
> xla:495336 hypothetical LOC495336
Length=711
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERY-RGVNLYVKNLDNSVDDDKLRELFERFGP 65
L+ Q + +R L+++ E+Q+ ER +Y VNLYVKNLD+ +DD++L+E+F ++GP
Sbjct 251 LYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERLKEIFSKYGP 310
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
SS KVM D SKGFGFVCF +P+ A+KAV + + + KPLY +A+R+E R+ L
Sbjct 311 ISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQRKEDRRAEL 370
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 2/103 (1%)
Query 27 EQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVC 86
+++ Q R +++ N+YVKN DD+KL+E+F FG S VM+D +G SKGFGFVC
Sbjct 170 DRKSQNRKQKFN--NIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVC 227
Query 87 FVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQRF 129
+++P+ A AVA MH K + G+ LY A+R+E+RQ+ L+ R
Sbjct 228 YLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEELKLRL 270
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNL +++ +L + F FG S K+ DE G SKG+GFV F + + A +A+ +
Sbjct 91 NIFIKNLAKTIEQKELYDTFSLFGRILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKV 150
Query 101 HLKYVNGKPLYTG-LAERREQRQQRLQQRF 129
+ + GK +Y G R +++ Q +Q+F
Sbjct 151 NNMSICGKVVYVGNFIPRSDRKSQNRKQKF 180
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query 40 VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASKAVA 98
+LYV +L ++DD+LR F GP + V RD S G+G+V F P DA +A+
Sbjct 2 TSLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALE 61
Query 99 DMHLKYVNGKPLYTGLAER 117
M+ + V G+P+ ++R
Sbjct 62 QMNYEVVMGRPIRIMWSQR 80
> ath:AT1G34140 PAB1; PAB1 (POLY(A) BINDING PROTEIN 1); RNA binding
/ translation initiation factor
Length=407
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Query 3 DEMILFVGPHQSRAQRTAALRMKYEQQQQERGERYR-GVNLYVKNLDNSVDDDKLRELFE 61
DE L VG Q + RT L+ K+E ++ R + R G+NLYVKNLD+SVD+ KL ELF
Sbjct 185 DEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFS 244
Query 62 RFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQR 121
FG +S KVM G+SKG GFV F + ++ASKA+ M+ K V KP+Y LA+ +EQ
Sbjct 245 EFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQH 304
Query 122 QQRLQQRFRLP 132
+ LQ +F P
Sbjct 305 KLHLQTQFNNP 315
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 0/92 (0%)
Query 40 VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVAD 99
N+YVKNL + D L+ LF FG +S VM+D +G S+ FGFV F + A A+
Sbjct 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query 100 MHLKYVNGKPLYTGLAERREQRQQRLQQRFRL 131
M+ V+ K L+ G A+R+ R + L+ +F L
Sbjct 179 MNGVVVDEKELHVGRAQRKTNRTEDLKAKFEL 210
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query 22 LRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKG 81
+R+ + ++ RG N++VKNLD S+D+ +L ++F FG S KV RD GVSKG
Sbjct 14 MRIMFSERDPSNRMSGRG-NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKG 72
Query 82 FGFVCFVSPDDASKAVADMH 101
+GFV F S D + + H
Sbjct 73 YGFVQFYS-DLSVYTACNFH 91
> hsa:132430 PABPC4L, DKFZp686J06116; poly(A) binding protein,
cytoplasmic 4-like; K13126 polyadenylate-binding protein
Length=428
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
++FVG Q + +R A L+ +EQ ++ER +GV LY+KNLD+++DD+KLR F FG
Sbjct 317 LIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGS 376
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAER 117
S VKVM++E G SKGFG +CF SP+DA+KA+ +M+ + + KPL LA+R
Sbjct 377 ISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 76/123 (61%), Gaps = 10/123 (8%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG ++R R A LR K + N+Y+KN +DD++L+++F ++G T
Sbjct 225 VFVGRFKNRKDREAELRSKASEF----------TNVYIKNFGGDMDDERLKDVFSKYGKT 274
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SVKVM D G SKGFGFV F S + A KAV +M+ + +NG+ ++ G A+++ +RQ L+
Sbjct 275 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 334
Query 127 QRF 129
Q F
Sbjct 335 QMF 337
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNLD S+D+ L E F FG S KVM D++G SKG+ FV F + A +A+ +M
Sbjct 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 215
Query 101 HLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ K + G ++ G + R+ R+ L+ +
Sbjct 216 NGKLLKGCKVFVGRFKNRKDREAELRSK 243
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query 8 FVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTS 67
V PH+ ++ + + ++ +YR +LYV +L V +D L F GP
Sbjct 36 LVSPHRDCSKNSRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVL 95
Query 68 SVKVMRDEKG-VSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAER 117
S+++ RD+ S G+ +V F+ DA KA+ M+ + GK + ++R
Sbjct 96 SIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQR 146
> ath:AT2G36660 PAB7; PAB7 (POLY(A) BINDING PROTEIN 7); RNA binding
/ translation initiation factor
Length=609
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 85/124 (68%), Gaps = 0/124 (0%)
Query 6 ILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGP 65
L+VG Q +A+R LR +++++ +E+ + N+YVKN++ +V +++LR+ F + G
Sbjct 270 CLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGT 329
Query 66 TSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRL 125
+S K+M DEKG SKGFGFVCF +P++A AV H + +GKPLY +A+++E R+ +L
Sbjct 330 ITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQL 389
Query 126 QQRF 129
Q +F
Sbjct 390 QVQF 393
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query 35 ERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDAS 94
E+Y NLY+KNLD V +D LRE F FG S+ + +DE + +G+ FV F +P+DA
Sbjct 198 EKY--TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDAR 255
Query 95 KAVADMHLKYVNGKPLYTGLAERREQRQQRLQQRFR 130
+A ++ K LY G A+++ +R+Q L+++F+
Sbjct 256 RAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFK 291
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query 36 RYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDAS 94
R GV N++VKNL SV + L+++F++FG S KV E G S+G+GFV F D A
Sbjct 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAH 166
Query 95 KAVADMHLKYVNGKPLYTG 113
A+ ++ V K +Y G
Sbjct 167 AAIQTLNSTIVADKEIYVG 185
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query 40 VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRD-EKGVSKGFGFVCFVSPDDASKAVA 98
+LYV +L SV + L + F F +SV++ +D G S +G+ F+S DA+ A+
Sbjct 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query 99 DMHLKYVNGK 108
+ +NGK
Sbjct 84 KKNNSLLNGK 93
> mmu:241989 Pabpc4l, C330050A14Rik, EG241989; poly(A) binding
protein, cytoplasmic 4-like; K13126 polyadenylate-binding protein
Length=370
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 10/126 (7%)
Query 4 EMILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERF 63
E LFV +SR R A LR K + N+Y+KN + VDD+KLRE+F ++
Sbjct 164 ESTLFVARFKSRKDREAELRDKPTEF----------TNVYIKNFGDDVDDEKLREVFSKY 213
Query 64 GPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQ 123
G T SVKVM+D G SKGFGFV F S + A AV DM+ + +NG+ ++ G A+++ +RQ
Sbjct 214 GQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQA 273
Query 124 RLQQRF 129
L++ F
Sbjct 274 ELKEMF 279
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG Q + +R A L+ +EQ ++ER + LY+KNLD+++DD+ LR+ F FG
Sbjct 260 IFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSI 319
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAER 117
VKVM+ E G SKGFG +CF SP+ A+KA+A+M+ + + KPL L ++
Sbjct 320 CRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQK 369
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query 21 ALRMKYEQQQQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVS 79
++R+ + Q++ R GV N+++KNLD S+D+ L E F FG S KVM D +G S
Sbjct 80 SIRLMW--SQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEG-S 136
Query 80 KGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
KG+GFV + A +A+ +M+ K + L+ + R+ R+ L+ +
Sbjct 137 KGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRDK 185
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query 36 RYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCFVSPDDAS 94
+YR +LYV +L V +D L F GP S+++ RD S G+ +V F+ +DA
Sbjct 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query 95 KAVADMHLKYVNGKPLYTGLAER 117
KA+ M+ + GK + ++R
Sbjct 66 KALVTMNFDVIKGKSIRLMWSQR 88
> hsa:140886 PABPC5, FLJ51677, PABP5; poly(A) binding protein,
cytoplasmic 5; K13126 polyadenylate-binding protein
Length=382
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 9/115 (7%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++VG + +R A +R + +R N++VKN+ + +DD+KL+ELF +GPT
Sbjct 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQR 121
SVKV+RD G SKGFGFV + + + A KAV D+H K ++GK LY G A+++ +R
Sbjct 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query 1 SSDEMILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELF 60
S D +L+VG Q + +R A LR ++E+ + + R GV +Y+KNLD +++D+KL+E F
Sbjct 263 SIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEF 322
Query 61 ERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERR 118
FG S KVM E G KGFG VCF S ++A+KAV +M+ + V KPL+ L + R
Sbjct 323 SSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNLD S+D+ L LF FG S KV+ D+ G SKG+ +V F S A++A+ M
Sbjct 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query 101 HLKYVNGKPLYTGLAERREQRQQRLQQRFR 130
+ +N + +Y G + E+R ++ R R
Sbjct 166 NGVRLNNRQVYVGRFKFPEERAAEVRTRDR 195
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query 44 VKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSK-GFGFVCFVSPDDASKAVADMHL 102
V +LD V +D L + F GP ++ RD S G+G+V F P DA A+ M+
Sbjct 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query 103 KYVNGKPL 110
+NGKP
Sbjct 82 DLINGKPF 89
> mmu:93728 Pabpc5, C820015E17, MGC130340, MGC130341; poly(A)
binding protein, cytoplasmic 5; K13126 polyadenylate-binding
protein
Length=381
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
++VG + +R A +R + ER N++VKN + +DD+KL +LF +GPT
Sbjct 174 VYVGRFKFPEERAAEVRTR---------ERATFTNVFVKNFGDDIDDEKLNKLFSEYGPT 224
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
SVKV+RD G SKGFGFV + + + A KAV ++H K ++GK L G A+++ +R L+
Sbjct 225 ESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELR 284
Query 127 QRF 129
+RF
Sbjct 285 RRF 287
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query 1 SSDEMILFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELF 60
S D +L VG Q + +R A LR ++E+ + + R GV +Y+KNLD +++D+KL+E F
Sbjct 262 SIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKEEF 321
Query 61 ERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQ 120
FG S KVM E G KGFG VCF S ++A KAV +M+ + + K L+ L + R +
Sbjct 322 SSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQARHR 380
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query 41 NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADM 100
N+++KNLD ++D+ L LF FG S KV+ D+ G SKG+ +V F S A++A+ M
Sbjct 106 NIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 164
Query 101 HLKYVNGKPLYTGLAERREQRQQRLQQRFR 130
+ +N + +Y G + E+R ++ R R
Sbjct 165 NGVRLNNRQVYVGRFKFPEERAAEVRTRER 194
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query 44 VKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSK-GFGFVCFVSPDDASKAVADMHL 102
V +LD V +D L + F GP ++ RD S G+G+V F P DA A+ M+
Sbjct 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query 103 KYVNGKPL 110
+NGKP
Sbjct 81 DLINGKPF 88
> ath:AT3G16380 PAB6; PAB6 (POLY(A) BINDING PROTEIN 6); RNA binding
/ translation initiation factor
Length=537
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
LFVG + +R L+ K+ + R NLYVKNL S+++ +LRE+F +G
Sbjct 272 LFVGKALKKDERREMLKQKFSDNFIAK-PNMRWSNLYVKNLSESMNETRLREIFGCYGQI 330
Query 67 SSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQ 126
S KVM E G SKGFGFVCF + +++ +A ++ V+GKP+ +AER+E R +RLQ
Sbjct 331 VSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQ 390
Query 127 QRFR 130
Q F+
Sbjct 391 QYFQ 394
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 60/90 (66%), Gaps = 0/90 (0%)
Query 40 VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVAD 99
N+YVKNL +V DD L LF ++G SSV VMRD G S+GFGFV F +P++A KA+
Sbjct 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query 100 MHLKYVNGKPLYTGLAERREQRQQRLQQRF 129
+ + K L+ G A ++++R++ L+Q+F
Sbjct 262 LCGLQLGSKKLFVGKALKKDERREMLKQKF 291
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query 21 ALRMKYEQQQQERGERYRG--VNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV 78
A+R+ + Q+ R R NLYVKNLD+S+ L +F FG S KV+ +E G
Sbjct 91 AMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVV-EENGQ 149
Query 79 SKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQR 121
SKGFGFV F + A A + +H V GK L+ +++R
Sbjct 150 SKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDER 192
> tgo:TGME49_024580 splicing factor, putative (EC:3.1.2.15); K12831
splicing factor 3B subunit 4
Length=576
Score = 66.6 bits (161), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query 24 MKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRD-EKGVSKGF 82
++ + Q+R G N+++ NLD VD+ + + F FG S K+MRD E G+S+GF
Sbjct 100 LRLNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGF 159
Query 83 GFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQR 124
GFV F + + + A+A M+ +++ +P++ A +++ R +R
Sbjct 160 GFVSFDTFEASDAALAAMNGQFICNRPIHVSYAYKKDTRGER 201
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query 35 ERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDE-KGVSKGFGFVCFVSPDDA 93
ER + LY+ NLD+ VDDD L ELF + GP +V V RD+ G +G+GFV F + DA
Sbjct 24 ERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDA 83
Query 94 SKAVADMHLKYVNGKPL 110
A+ M++ + GK L
Sbjct 84 DYALKLMNMVKLYGKAL 100
> ath:AT5G54580 RNA recognition motif (RRM)-containing protein
Length=156
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query 14 SRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMR 73
S A R + L + E Q R + NL+V L + LR F +FG + KV+
Sbjct 30 SNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVT 89
Query 74 DE-KGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQ 122
D G SKGFGFV + + +D++K +A M K+++G ++ A REQ Q
Sbjct 90 DRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQ 139
> mmu:100503296 polyadenylate-binding protein 4-like
Length=234
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query 7 LFVGPHQSRAQRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPT 66
+FVG +SR +R A L K ++ N+Y+KN VDD L+ELF +FG T
Sbjct 168 VFVGRFKSRKEREAELGAKAKEF----------TNVYIKNFGEEVDDGNLKELFSQFGKT 217
Query 67 SSVKVMRDEKGVSKGFG 83
SVKVMRD G SKGFG
Sbjct 218 LSVKVMRDSSGKSKGFG 234
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query 29 QQQERGERYRGV-NLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCF 87
Q++ R GV N+++KNLD S+D+ L + F FG S KV+ DE G SKG+ FV F
Sbjct 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHF 145
Query 88 VSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ + A KA+ M+ +N + ++ G + R++R+ L +
Sbjct 146 ETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query 37 YRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKG-VSKGFGFVCFVSPDDASK 95
Y +LYV +L + V + L E F GP S++V RD S G+ +V F P DA +
Sbjct 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query 96 AVADMHLKYVNGKPLYTGLAER 117
A+ M+ + GKP+ ++R
Sbjct 68 ALDTMNFDVMKGKPIRIMWSQR 89
> pfa:PF14_0194 spliceosome-associated protein, putative; K12831
splicing factor 3B subunit 4
Length=484
Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 0/86 (0%)
Query 39 GVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVA 98
G NL++ NLD+ VD+ L ++F FG +VKVMR+E SKG GF+ + + + + A+
Sbjct 106 GANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIE 165
Query 99 DMHLKYVNGKPLYTGLAERREQRQQR 124
+M+ +++ K ++ A +++ + +R
Sbjct 166 NMNNQFICNKKVHISYAFKKDSKGER 191
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query 35 ERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDE-KGVSKGFGFVCFVSPDDA 93
ER LY+ NLD VD++ L ELF + G +V + RD+ G G+GFV + +
Sbjct 15 ERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYEC 74
Query 94 SKAVADMHLKYVNGKPL 110
A +++ + GK L
Sbjct 75 EYAANILNMTKLFGKAL 91
> sce:YNL016W PUB1, RNP1; Poly (A)+ RNA-binding protein, abundant
mRNP-component protein that binds mRNA and is required for
stability of many mRNAs; component of glucose deprivation
induced stress granules, involved in P-body-dependent granule
assembly; K13201 nucleolysin TIA-1/TIAR
Length=453
Score = 62.8 bits (151), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query 26 YEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRD-EKGVSKGFGF 84
++ QQ + + NL+V +L+ +VDD+ LR F+ F S VM D + G S+G+GF
Sbjct 151 FQSQQSSSDDTF---NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGF 207
Query 85 VCFVSPDDASKAVADMHLKYVNGKPLYTGLAERRE 119
V F S DDA A+ M + +NG+PL A +R+
Sbjct 208 VSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query 42 LYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVADMH 101
LYV NLD ++ +D L++ F+ GP +++K+M D+ + + FV + DA+ A
Sbjct 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIA----- 131
Query 102 LKYVNGKPL 110
L+ +NGK +
Sbjct 132 LQTLNGKQI 140
> ath:AT3G04500 RNA recognition motif (RRM)-containing protein
Length=245
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query 42 LYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEK-GVSKGFGFVCFVSPDDASKAVADM 100
L+ +L N V+DD L + F RF + KV+RD++ G +KG+GFV F++P D + A+ +M
Sbjct 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query 101 HLKYVNGKPLYTGLAERREQRQQRLQQR 128
+ KYV +P+ + +E+ Q +R
Sbjct 199 NGKYVGNRPIKLRKSSWKERTDQEAAER 226
> cel:C18A3.5 hypothetical protein; K13201 nucleolysin TIA-1/TIAR
Length=376
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query 29 QQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGV-SKGFGFVCF 87
QQQ + + R +++V +L + VD+ KLRE F+ FG S KV+RD SKG+GFV +
Sbjct 92 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 151
Query 88 VSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQR 124
++A +A+ M+ +++ + + T A R+ Q++
Sbjct 152 PKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 188
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 0/38 (0%)
Query 42 LYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVS 79
LYV NLD++V +D + LF + G + KV+ DE V+
Sbjct 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEMKVN 85
> pfa:MAL8P1.40 RNA binding protein, putative
Length=286
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 0/85 (0%)
Query 39 GVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGFGFVCFVSPDDASKAVA 98
G N++V +L + D +L + F+ FG S ++ RD G +KG+GFV F +P+ A A+
Sbjct 149 GANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIK 208
Query 99 DMHLKYVNGKPLYTGLAERREQRQQ 123
MH YV+GK L L + E Q
Sbjct 209 GMHGFYVSGKHLKVQLKKGEEHYVQ 233
> ath:AT3G23830 GRP4; GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4);
RNA binding / double-stranded DNA binding / single-stranded
DNA binding
Length=136
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query 36 RYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRD-EKGVSKGFGFVCFVSPDDAS 94
RY L+V L DD L++ F FG + V+ D E G S+GFGFV F D A+
Sbjct 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query 95 KAVADMHLKYVNGKPLYTGLAERREQ 120
A+ +M K +NG+ + LA R
Sbjct 91 NAIKEMDGKELNGRQIRVNLATERSS 116
> cel:C07A4.1 hypothetical protein
Length=360
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query 17 QRTAALRMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRD-E 75
Q +A L E + R + + +++V +L V ++ L+ F +FG S KV+RD +
Sbjct 112 QESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQ 171
Query 76 KGVSKGFGFVCFVSPDDASKAVADMHLKYVNGKPLYTGLAERREQRQQR 124
SKG+GFV F + +A A+A M+ K++ + + T A R+ + R
Sbjct 172 TQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENR 220
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query 23 RMKYEQQQQERGERYRGVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVSKGF 82
R K +Q + ++YV N+ D LR+LF +G + V++ + ++ +
Sbjct 220 RDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQR-----Y 274
Query 83 GFVCFVSPDDASKAVADMHLKYVNGK 108
FV + + A+KA+ +M+ K + G
Sbjct 275 AFVRYEKKECATKAIMEMNGKEMAGN 300
> bbo:BBOV_III006220 17.m07552; RNA recognition motif domaining
containing protein; K12831 splicing factor 3B subunit 4
Length=280
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query 39 GVNLYVKNLDNSVDDDKLRELFERFGPTSSVKVMRDEKGVS-KGFGFVCFVSPDDASKAV 97
G NL++ NLD VDD +L + F FG S V+RD K F FV + S + + A+
Sbjct 104 GANLFIGNLDPDVDDKQLHDTFASFGNVISANVVRDGDATDRKAFAFVSYDSFEASDAAL 163
Query 98 ADMHLKYVNGKPLYTGLAERREQRQQR 124
A M+ +++ KP++ A +++ + +R
Sbjct 164 AAMNGQFICNKPIHVSYAYKKDTKGER 190
Lambda K H
0.319 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2099897216
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40