bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_865 164,496 sequences; 82,071,388 total letters Query= Emax_2732_orf2 Length=158 Score E Sequences producing significant alignments: (Bits) Value hsa:9572 NR1D1, EAR1, THRA1, THRAL, ear-1, hRev; nuclear recep... 172 4e-43 cel:W05B5.3 nhr-85; Nuclear Hormone Receptor family member (nh... 172 5e-43 mmu:217166 Nr1d1, A530070C09Rik, R75201; nuclear receptor subf... 172 5e-43 dre:494487 nr1d1, Eip75B; nuclear receptor subfamily 1, group ... 171 7e-43 hsa:9975 NR1D2, BD73, EAR-1R, RVR; nuclear receptor subfamily ... 171 9e-43 mmu:353187 Nr1d2, RVR, Rev-erb; nuclear receptor subfamily 1, ... 170 2e-42 xla:444369 nr1d1, MGC82865, MGC82881, ear-1, ear1, hrev, thra1... 168 8e-42 dre:402815 nr1d2a, reverbb1; nuclear receptor subfamily 1, gro... 166 4e-41 dre:563150 nr1d4a, gb:dq017622; nuclear receptor subfamily 1, ... 165 7e-41 dre:30271 nr1d2b, reverbb, reverbb2, zgc:92019; nuclear recept... 164 1e-40 dre:571948 nr1d4b, gb:dq017623; nuclear receptor subfamily 1, ... 161 8e-40 hsa:5468 PPARG, CIMT1, GLM1, NR1C3, PPARG1, PPARG2, PPARgamma;... 139 3e-33 mmu:19016 Pparg, Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma, PP... 139 5e-33 dre:30754 ppardb, pparb2; peroxisome proliferator-activated re... 135 4e-32 xla:397769 pparg, xPPAR-gamma; peroxisome proliferator-activat... 134 1e-31 hsa:5467 PPARD, FAAR, MGC3931, NR1C2, NUC1, NUCI, NUCII, PPARB... 131 1e-30 mmu:19015 Ppard, NUC-1, NUC1, Nr1c2, PPAR-beta, PPAR-delta, PP... 130 1e-30 dre:563298 pparaa, ppara3, si:ch211-239e6.3; peroxisome prolif... 130 2e-30 xla:397768 ppard, pparb; peroxisome proliferator-activated rec... 128 7e-30 xla:496107 ppara, PPARalpha, nr1c1, xPPARalpha, xppara; peroxi... 128 1e-29 hsa:6095 RORA, DKFZp686M2414, MGC119326, MGC119329, NR1F1, ROR... 125 5e-29 hsa:5465 PPARA, MGC2237, MGC2452, NR1C1, PPAR, PPARalpha, hPPA... 125 6e-29 mmu:19013 Ppara, 4933429D07Rik, AW742785, Nr1c1, PPAR-alpha, P... 125 6e-29 xla:398843 ppara, MGC68537, nr1c1; peroxisome proliferator act... 125 7e-29 dre:557037 pparg, PPAR[g]; peroxisome proliferator activated r... 125 7e-29 cel:C01H6.5 nhr-23; Nuclear Hormone Receptor family member (nh... 124 2e-28 dre:559245 rorca, rorc, rorg; RAR-related orphan receptor C a 122 3e-28 dre:557714 pparab, PPAR[a], ppara, ppara1, pparal; peroxisome ... 122 3e-28 dre:562258 rorcb, si:ch211-168n16.2; RAR-related orphan recept... 122 5e-28 dre:567943 rorb, nr1f2, rzrb, sb:eu943; RAR-related orphan rec... 122 6e-28 hsa:6096 RORB, NR1F2, ROR-BETA, RZR-BETA, RZRB, bA133M9.1; RAR... 122 6e-28 mmu:225998 Rorb, MGC38728, Nr1f2, RZR-beta, RZRB; RAR-related ... 122 7e-28 mmu:19883 Rora, 9530021D13Rik, Nr1f1, ROR1, ROR2, ROR3, nmf267... 121 1e-27 dre:100004847 RAR-related orphan receptor A-like 121 1e-27 dre:554722 rorab, MGC174539, MGC55954, Rora, wu:fq24g04, zgc:5... 120 2e-27 dre:564951 roraa, RORalpha-B, gb:dq017624, rora2; RAR-related ... 120 2e-27 mmu:19885 Rorc, Nr1f3, RORgamma, TOR, Thor; RAR-related orphan... 119 5e-27 cel:F44A6.2 sex-1; Signal Element on X family member (sex-1); ... 117 2e-26 hsa:6097 RORC, MGC129539, NR1F3, RORG, RZR-GAMMA, RZRG, TOR; R... 115 6e-26 dre:100034753 rargb, RARgamma-B; retinoic acid receptor, gamma b 112 5e-25 dre:30606 rarga, MGC109801, NR1B3, etID309710.23, etID33387.23... 112 6e-25 cel:Y104H12A.1 nhr-41; Nuclear Hormone Receptor family member ... 108 7e-24 dre:569321 nr2c2, TR4, gb:dq017625, im:6911408; nuclear recept... 108 7e-24 hsa:7182 NR2C2, TAK1, TR2R1, TR4, hTAK1; nuclear receptor subf... 108 9e-24 xla:399081 rara, nr1b1, rara2a; retinoic acid receptor, alpha;... 107 2e-23 hsa:5916 RARG, NR1B3, RARC; retinoic acid receptor, gamma; K08... 107 2e-23 xla:397983 rarg, nr1b3; retinoic acid receptor, gamma; K08529 ... 107 2e-23 hsa:6257 RXRB, DAUDI6, H-2RIIBP, MGC1831, NR2B2, RCoR-1; retin... 106 3e-23 mmu:19411 Rarg, AI385767, MGC11555, MGC18523, Nr1b3, RARD, RAR... 106 3e-23 hsa:2063 NR2F6, EAR-2, EAR2, ERBAL2; nuclear receptor subfamil... 106 3e-23 > hsa:9572 NR1D1, EAR1, THRA1, THRAL, ear-1, hRev; nuclear receptor subfamily 1, group D, member 1; K03728 nuclear receptor subfamily 1 group D member 1 Length=614 Score = 172 bits (436), Expect = 4e-43, Method: Composition-based stats. Identities = 75/108 (69%), Positives = 89/108 (82%), Gaps = 0/108 (0%) Query 12 SKQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQ 71 S S + + +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ Sbjct 114 SPSKSTSNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNE 173 Query 72 QCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQ 119 CSI+RINRNRCQ CR KKC++VGMSRDAVRFGR+PKREK ++LA MQ Sbjct 174 NCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQ 221 > cel:W05B5.3 nhr-85; Nuclear Hormone Receptor family member (nhr-85) Length=514 Score = 172 bits (435), Expect = 5e-43, Method: Composition-based stats. Identities = 80/134 (59%), Positives = 97/134 (72%), Gaps = 3/134 (2%) Query 6 HHHHGS---SKQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEI 62 + HG+ SK ++ + T+LC+VC DKASGFHYGV +CEGCKGFFRRSIQQ+I Sbjct 86 YSEHGALEGSKSLAKDENASTSAGTILCQVCSDKASGFHYGVFACEGCKGFFRRSIQQKI 145 Query 63 QYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVN 122 YR CT+ + C ILR NRNRCQ CRLKKC+AVGMSRDAVRFGRVPKREKA++ MQK N Sbjct 146 TYRACTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKREKARMFEEMQKTN 205 Query 123 AHSLDKALGMVLED 136 S + + E+ Sbjct 206 VQSQRDQIAIQYEN 219 > mmu:217166 Nr1d1, A530070C09Rik, R75201; nuclear receptor subfamily 1, group D, member 1; K03728 nuclear receptor subfamily 1 group D member 1 Length=615 Score = 172 bits (435), Expect = 5e-43, Method: Composition-based stats. Identities = 73/98 (74%), Positives = 86/98 (87%), Gaps = 0/98 (0%) Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81 + +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ CSI+RINRN Sbjct 125 KLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRN 184 Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQ 119 RCQ CR KKC++VGMSRDAVRFGR+PKREK ++LA MQ Sbjct 185 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQ 222 > dre:494487 nr1d1, Eip75B; nuclear receptor subfamily 1, group d, member 1; K03728 nuclear receptor subfamily 1 group D member 1 Length=637 Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 73/109 (66%), Positives = 90/109 (82%), Gaps = 0/109 (0%) Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81 + +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ C+I+RINRN Sbjct 120 KLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNETCTIMRINRN 179 Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKAL 130 RCQ CR KKC++VGMSRDAVRFGR+PKREK ++LA MQ + ++ L Sbjct 180 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQNAMNNMVNNQL 228 > hsa:9975 NR1D2, BD73, EAR-1R, RVR; nuclear receptor subfamily 1, group D, member 2; K08531 nuclear receptor subfamily 1 group D member 2 Length=504 Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 77/131 (58%), Positives = 97/131 (74%), Gaps = 5/131 (3%) Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81 +F G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ CSI+R+NRN Sbjct 20 KFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRN 79 Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGHNIS 141 RCQ CR KKC++VGMSRDAVRFGR+PKREK ++L MQ ++ GH + Sbjct 80 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFS-----GHLQN 134 Query 142 VSIAKAHEETC 152 ++ + HE+T Sbjct 135 DTLVEHHEQTA 145 > mmu:353187 Nr1d2, RVR, Rev-erb; nuclear receptor subfamily 1, group D, member 2; K08531 nuclear receptor subfamily 1 group D member 2 Length=576 Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 76/130 (58%), Positives = 98/130 (75%), Gaps = 5/130 (3%) Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81 +F G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ CSI+R+NRN Sbjct 95 KFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRN 154 Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGHNIS 141 RCQ CR KKC++VGMSRDAVRFGR+PKREK ++L MQ ++ GH + Sbjct 155 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNTQF-----SGHLQN 209 Query 142 VSIAKAHEET 151 ++A+ H+++ Sbjct 210 DTLAEQHDQS 219 > xla:444369 nr1d1, MGC82865, MGC82881, ear-1, ear1, hrev, thra1, thral; nuclear receptor subfamily 1, group D, member 1; K03728 nuclear receptor subfamily 1 group D member 1 Length=519 Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 72/103 (69%), Positives = 86/103 (83%), Gaps = 0/103 (0%) Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81 + +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ CSI+RINRN Sbjct 107 KLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNETCSIVRINRN 166 Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAH 124 RCQ CR +KC++VGMSRDAVRFGR+PKREK ++LA M H Sbjct 167 RCQQCRFRKCLSVGMSRDAVRFGRIPKREKQRMLAEMHSAMNH 209 > dre:402815 nr1d2a, reverbb1; nuclear receptor subfamily 1, group D, member 2a Length=504 Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 70/98 (71%), Positives = 84/98 (85%), Gaps = 0/98 (0%) Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81 + +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C K + C+I+RINRN Sbjct 78 KLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKTESCTIVRINRN 137 Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQ 119 RCQ CR KKC++VGMSRDAVRFGR+PKREK ++L MQ Sbjct 138 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLLEMQ 175 > dre:563150 nr1d4a, gb:dq017622; nuclear receptor subfamily 1, group D, member 4a Length=570 Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 72/114 (63%), Positives = 88/114 (77%), Gaps = 0/114 (0%) Query 25 GTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQ 84 G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ I Y+ C KN+ C I+R+NRNRCQ Sbjct 109 GMVLLCKVCGDIASGFHYGVHACEGCKGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQ 168 Query 85 YCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGH 138 +CR KKC++VGMSRDAVRFGR+PKREK ++L MQ + ++GM H Sbjct 169 HCRFKKCLSVGMSRDAVRFGRIPKREKQRLLDEMQSYMNSLNESSMGMETSPQH 222 > dre:30271 nr1d2b, reverbb, reverbb2, zgc:92019; nuclear receptor subfamily 1, group D, member 2b; K08531 nuclear receptor subfamily 1 group D member 2 Length=578 Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 71/104 (68%), Positives = 85/104 (81%), Gaps = 0/104 (0%) Query 12 SKQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQ 71 S S++ + +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ Sbjct 68 SLSSTKSGITKINGLVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNE 127 Query 72 QCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKIL 115 C I+RINRNRCQ CR KKC+ VGMSRDAVRFGR+PKREK ++L Sbjct 128 SCPIMRINRNRCQQCRFKKCLLVGMSRDAVRFGRIPKREKQRML 171 > dre:571948 nr1d4b, gb:dq017623; nuclear receptor subfamily 1, group D, member 4b Length=576 Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 71/106 (66%), Positives = 88/106 (83%), Gaps = 1/106 (0%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ I Y+ C KN+ C I+R+NRNRCQ+C Sbjct 116 VLLCKVCGDIASGFHYGVHACEGCKGFFRRSIQQNIHYKMCVKNENCLIMRMNRNRCQHC 175 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGM 132 R KKC++VGMSRDAVRFGR+PKREK ++L MQ +SL+++ M Sbjct 176 RFKKCLSVGMSRDAVRFGRIPKREKQRLLDEMQSY-MNSLNESASM 220 > hsa:5468 PPARG, CIMT1, GLM1, NR1C3, PPARG1, PPARG2, PPARgamma; peroxisome proliferator-activated receptor gamma; K08530 peroxisome proliferator-activated receptor gamma Length=477 Score = 139 bits (351), Expect = 3e-33, Method: Composition-based stats. Identities = 67/123 (54%), Positives = 88/123 (71%), Gaps = 7/123 (5%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C N C I + +RN+CQYCR + Sbjct 111 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLN--CRIHKKSRNKCQYCRFQ 168 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQ----KVNAHSLD-KALGMVLEDGHNISVSI 144 KC+AVGMS +A+RFGR+P+ EK K+LA + ++N S D +AL L D + S + Sbjct 169 KCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPL 228 Query 145 AKA 147 KA Sbjct 229 TKA 231 > mmu:19016 Pparg, Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma, PPARgamma2; peroxisome proliferator activated receptor gamma; K08530 peroxisome proliferator-activated receptor gamma Length=475 Score = 139 bits (349), Expect = 5e-33, Method: Composition-based stats. Identities = 67/123 (54%), Positives = 88/123 (71%), Gaps = 7/123 (5%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C N C I + +RN+CQYCR + Sbjct 109 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLN--CRIHKKSRNKCQYCRFQ 166 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQ----KVNAHSLD-KALGMVLEDGHNISVSI 144 KC+AVGMS +A+RFGR+P+ EK K+LA + ++N S D +AL L D + S + Sbjct 167 KCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPL 226 Query 145 AKA 147 KA Sbjct 227 TKA 229 > dre:30754 ppardb, pparb2; peroxisome proliferator-activated receptor delta b; K04504 peroxisome proliferator-activated receptor delta Length=517 Score = 135 bits (341), Expect = 4e-32, Method: Composition-based stats. Identities = 54/94 (57%), Positives = 76/94 (80%), Gaps = 2/94 (2%) Query 25 GTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQ 84 G V CR+CGDKASGFHYGVH+CEGCKGFFRR+I+ +++Y C + C + + +RN+CQ Sbjct 147 GLNVECRICGDKASGFHYGVHACEGCKGFFRRTIRMKLEYERCER--ACKVQKKSRNKCQ 204 Query 85 YCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAM 118 YCR +KC+A+GMS DA+R+GR+P+ EK K++A + Sbjct 205 YCRFQKCLALGMSHDAIRYGRMPEAEKKKLVAGL 238 > xla:397769 pparg, xPPAR-gamma; peroxisome proliferator-activated receptor gamma; K08530 peroxisome proliferator-activated receptor gamma Length=477 Score = 134 bits (337), Expect = 1e-31, Method: Composition-based stats. Identities = 65/123 (52%), Positives = 87/123 (70%), Gaps = 7/123 (5%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C N C I + +RN+CQ+CR + Sbjct 113 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYERCDLN--CRIHKKSRNKCQFCRFQ 170 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQ----KVNAHSLD-KALGMVLEDGHNISVSI 144 KC+AVGMS +A+RFGR+P+ EK K+LA + ++N S D + L L D + S + Sbjct 171 KCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADQRVLAKHLYDSYVKSFPL 230 Query 145 AKA 147 KA Sbjct 231 TKA 233 > hsa:5467 PPARD, FAAR, MGC3931, NR1C2, NUC1, NUCI, NUCII, PPARB; peroxisome proliferator-activated receptor delta; K04504 peroxisome proliferator-activated receptor delta Length=441 Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 55/89 (61%), Positives = 75/89 (84%), Gaps = 2/89 (2%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ +++Y C ++ C I + NRN+CQYCR + Sbjct 74 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQ 131 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAM 118 KC+A+GMS +A+RFGR+P+ EK K++A + Sbjct 132 KCLALGMSHNAIRFGRMPEAEKRKLVAGL 160 > mmu:19015 Ppard, NUC-1, NUC1, Nr1c2, PPAR-beta, PPAR-delta, PPAR[b], PPARdelta, Pparb, Pparb/d; peroxisome proliferator activator receptor delta; K04504 peroxisome proliferator-activated receptor delta Length=440 Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 55/89 (61%), Positives = 75/89 (84%), Gaps = 2/89 (2%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ +++Y C ++ C I + NRN+CQYCR + Sbjct 73 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKC--DRICKIQKKNRNKCQYCRFQ 130 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAM 118 KC+A+GMS +A+RFGR+P+ EK K++A + Sbjct 131 KCLALGMSHNAIRFGRMPEAEKRKLVAGL 159 > dre:563298 pparaa, ppara3, si:ch211-239e6.3; peroxisome proliferator-activated receptor alpha a Length=470 Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 55/90 (61%), Positives = 74/90 (82%), Gaps = 2/90 (2%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 T+ CRVC D+ASGFHYGVH+CEGCKGFFRR+I+ +++Y C +N C I + NRN+CQYC Sbjct 96 TLECRVCADRASGFHYGVHACEGCKGFFRRTIRLKLEYDKCERN--CKIQKKNRNKCQYC 153 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILA 116 R +KC+AVGMS +A+RFGR+P+ EK ++ A Sbjct 154 RFRKCLAVGMSHNAIRFGRIPQSEKQRLKA 183 > xla:397768 ppard, pparb; peroxisome proliferator-activated receptor delta Length=396 Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 56/105 (53%), Positives = 80/105 (76%), Gaps = 2/105 (1%) Query 13 KQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQ 72 +Q S +++ +V C++CGD+ASGFHYGVH+CEGCKGFFRR+I+ +QY C +N Sbjct 14 EQPSTPLEHQETSQSVDCKICGDRASGFHYGVHACEGCKGFFRRTIRMRLQYEHCDRN-- 71 Query 73 CSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAA 117 C I + NRN+CQYCR KC+++GMS +A+RFGR+P+ EK K++ A Sbjct 72 CKIQKKNRNKCQYCRFNKCLSLGMSHNAIRFGRMPESEKRKLVQA 116 > xla:496107 ppara, PPARalpha, nr1c1, xPPARalpha, xppara; peroxisome proliferator-activated receptor alpha Length=469 Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 56/87 (64%), Positives = 71/87 (81%), Gaps = 2/87 (2%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C + C I + NRN+CQYCR + Sbjct 104 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLVYDQCER--MCKIQKKNRNKCQYCRFE 161 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILA 116 KC+ VGMS +A+RFGR+P+ EKAK+ A Sbjct 162 KCLNVGMSHNAIRFGRMPRSEKAKLKA 188 > hsa:6095 RORA, DKFZp686M2414, MGC119326, MGC119329, NR1F1, ROR1, ROR2, ROR3, RZR-ALPHA, RZRA; RAR-related orphan receptor A; K08532 RAR-related orphan receptor alpha Length=548 Score = 125 bits (314), Expect = 5e-29, Method: Composition-based stats. Identities = 54/91 (59%), Positives = 71/91 (78%), Gaps = 1/91 (1%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R +RNRCQ+CRL+ Sbjct 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHCRLQ 156 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120 KC+AVGMSRDAV+FGR+ K+++ + A +QK Sbjct 157 KCLAVGMSRDAVKFGRMSKKQRDSLYAEVQK 187 > hsa:5465 PPARA, MGC2237, MGC2452, NR1C1, PPAR, PPARalpha, hPPAR; peroxisome proliferator-activated receptor alpha; K07294 peroxisome proliferator-activated receptor alpha Length=468 Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 54/89 (60%), Positives = 73/89 (82%), Gaps = 2/89 (2%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CR+CGDKASG+HYGVH+CEGCKGFFRR+I+ ++ Y C ++ C I + NRN+CQYCR Sbjct 102 CRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFH 159 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAM 118 KC++VGMS +A+RFGR+P+ EKAK+ A + Sbjct 160 KCLSVGMSHNAIRFGRMPRSEKAKLKAEI 188 > mmu:19013 Ppara, 4933429D07Rik, AW742785, Nr1c1, PPAR-alpha, PPARalpha, Ppar; peroxisome proliferator activated receptor alpha; K07294 peroxisome proliferator-activated receptor alpha Length=468 Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 54/89 (60%), Positives = 73/89 (82%), Gaps = 2/89 (2%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CR+CGDKASG+HYGVH+CEGCKGFFRR+I+ ++ Y C ++ C I + NRN+CQYCR Sbjct 102 CRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFH 159 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAM 118 KC++VGMS +A+RFGR+P+ EKAK+ A + Sbjct 160 KCLSVGMSHNAIRFGRMPRSEKAKLKAEI 188 > xla:398843 ppara, MGC68537, nr1c1; peroxisome proliferator activated receptor alpha; K07294 peroxisome proliferator-activated receptor alpha Length=474 Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 55/87 (63%), Positives = 70/87 (80%), Gaps = 2/87 (2%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CRVC DKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C + C I + NRN+CQYCR + Sbjct 109 CRVCSDKASGFHYGVHACEGCKGFFRRTIRLKLVYDRCER--MCKIQKKNRNKCQYCRFE 166 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILA 116 KC+ VGMS +A+RFGR+P+ EKAK+ A Sbjct 167 KCLNVGMSHNAIRFGRMPRSEKAKLKA 193 > dre:557037 pparg, PPAR[g]; peroxisome proliferator activated receptor gamma; K08530 peroxisome proliferator-activated receptor gamma Length=527 Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 55/87 (63%), Positives = 71/87 (81%), Gaps = 2/87 (2%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C + C I + +RN+CQYCR + Sbjct 155 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLVYDHC--DLHCRIHKKSRNKCQYCRFQ 212 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILA 116 KC+ VGMS +A+RFGR+P+ EK K+LA Sbjct 213 KCLMVGMSHNAIRFGRMPQAEKEKLLA 239 > cel:C01H6.5 nhr-23; Nuclear Hormone Receptor family member (nhr-23); K08701 nuclear receptor subfamily 1 group D member 3 Length=439 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 53/88 (60%), Positives = 70/88 (79%), Gaps = 1/88 (1%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 + C+VCGDK+SG HYGV +CEGCKGFFRRS + Y+ C + + C + R+NRNRCQYC Sbjct 9 VIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQ-CPRQKNCVVDRVNRNRCQYC 67 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKI 114 RLKKCI +GMSRDAV+FGR+ K+++ K+ Sbjct 68 RLKKCIELGMSRDAVKFGRMSKKQREKV 95 > dre:559245 rorca, rorc, rorg; RAR-related orphan receptor C a Length=479 Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 54/94 (57%), Positives = 73/94 (77%), Gaps = 1/94 (1%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 + C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C++ + C I R NRNRCQ+C Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYS-CSRQRNCIIDRTNRNRCQHC 65 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120 RL+KC+A+GMSRDAV+FGR+ K+++ + A +QK Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQK 99 > dre:557714 pparab, PPAR[a], ppara, ppara1, pparal; peroxisome proliferator activated receptor alpha b; K07294 peroxisome proliferator-activated receptor alpha Length=459 Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 54/99 (54%), Positives = 78/99 (78%), Gaps = 4/99 (4%) Query 22 EFDGTTV--LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRIN 79 EF T++ CRVC D+ASG+HYGVH+CEGCKGFFRR+I+ +++Y C + +C I + N Sbjct 87 EFTSTSLNLECRVCSDRASGYHYGVHACEGCKGFFRRTIRLKLEYDKCER--RCKIQKKN 144 Query 80 RNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAM 118 RN+CQYCR +KC++VGMS +A+RFGR+P+ EK ++ A + Sbjct 145 RNKCQYCRFQKCLSVGMSHNAIRFGRMPQSEKLRLKAEI 183 > dre:562258 rorcb, si:ch211-168n16.2; RAR-related orphan receptor C b Length=480 Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 59/115 (51%), Positives = 80/115 (69%), Gaps = 5/115 (4%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 + C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C++ + C I R NRNRCQ+C Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYS-CSRQRNCLIDRTNRNRCQHC 65 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMV----LEDG 137 RL+KC+A+GMSRDAV+FGR+ K+++ + A +Q+ S D G+ EDG Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQRHQQLSQDCLAGLTGRDEAEDG 120 > dre:567943 rorb, nr1f2, rzrb, sb:eu943; RAR-related orphan receptor B; K08533 RAR-related orphan receptor beta Length=466 Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 54/94 (57%), Positives = 72/94 (76%), Gaps = 1/94 (1%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 + C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R NRNRCQ+C Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYS-CPRQRNCLIDRTNRNRCQHC 65 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120 RL+KC+A+GMSRDAV+FGR+ K+++ + A +QK Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQK 99 > hsa:6096 RORB, NR1F2, ROR-BETA, RZR-BETA, RZRB, bA133M9.1; RAR-related orphan receptor B; K08533 RAR-related orphan receptor beta Length=459 Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 54/94 (57%), Positives = 72/94 (76%), Gaps = 1/94 (1%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 + C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R NRNRCQ+C Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYS-CPRQRNCLIDRTNRNRCQHC 65 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120 RL+KC+A+GMSRDAV+FGR+ K+++ + A +QK Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQK 99 > mmu:225998 Rorb, MGC38728, Nr1f2, RZR-beta, RZRB; RAR-related orphan receptor beta; K08533 RAR-related orphan receptor beta Length=459 Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 54/94 (57%), Positives = 72/94 (76%), Gaps = 1/94 (1%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 + C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R NRNRCQ+C Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYS-CPRQRNCLIDRTNRNRCQHC 65 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120 RL+KC+A+GMSRDAV+FGR+ K+++ + A +QK Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQK 99 > mmu:19883 Rora, 9530021D13Rik, Nr1f1, ROR1, ROR2, ROR3, nmf267, sg, staggerer; RAR-related orphan receptor alpha; K08532 RAR-related orphan receptor alpha Length=523 Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 54/93 (58%), Positives = 72/93 (77%), Gaps = 1/93 (1%) Query 28 VLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCR 87 + C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R +RNRCQ+CR Sbjct 71 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHCR 129 Query 88 LKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120 L+KC+AVGMSRDAV+FGR+ K+++ + A +QK Sbjct 130 LQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQK 162 > dre:100004847 RAR-related orphan receptor A-like Length=433 Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 54/98 (55%), Positives = 72/98 (73%), Gaps = 1/98 (1%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 + C++CGDK+SG HYGV +CEGCKGFFRRS +QY C++ C I R +RNRCQ C Sbjct 8 VIPCKICGDKSSGVHYGVITCEGCKGFFRRSQSSSVQYS-CSRQSNCPIDRASRNRCQSC 66 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAH 124 RLKKC+A GMSRDAV+FGR+ KR++ + A +++ H Sbjct 67 RLKKCVAQGMSRDAVKFGRMSKRQRDSLFAEVERHRQH 104 > dre:554722 rorab, MGC174539, MGC55954, Rora, wu:fq24g04, zgc:55954; RAR-related orphan receptor A, paralog b; K08532 RAR-related orphan receptor alpha Length=474 Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 53/94 (56%), Positives = 73/94 (77%), Gaps = 1/94 (1%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 ++ C++CGDK+SG HYGV +CEGCKGFFR S Q + Y C + + C I R +RNRCQ+C Sbjct 14 SIPCKICGDKSSGIHYGVITCEGCKGFFRGSQQGTVSYS-CPRQKSCLIDRTSRNRCQHC 72 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120 RL+KC+AVGMSRDAV+FGR+ K+++ + A +QK Sbjct 73 RLQKCLAVGMSRDAVKFGRMSKKQRDSLFAEVQK 106 > dre:564951 roraa, RORalpha-B, gb:dq017624, rora2; RAR-related orphan receptor A, paralog a; K08532 RAR-related orphan receptor alpha Length=468 Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 54/93 (58%), Positives = 72/93 (77%), Gaps = 1/93 (1%) Query 28 VLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCR 87 + C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R +RNRCQ+CR Sbjct 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS-CPRQKNCLIDRTSRNRCQHCR 74 Query 88 LKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120 L+KC+AVGMSRDAV+FGR+ K+++ + A +QK Sbjct 75 LQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQK 107 > mmu:19885 Rorc, Nr1f3, RORgamma, TOR, Thor; RAR-related orphan receptor gamma; K08534 RAR-related orphan receptor gamma Length=516 Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 52/88 (59%), Positives = 70/88 (79%), Gaps = 1/88 (1%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 + C++CGDK+SG HYGV +CEGCKGFFRRS Q + Y CT+ Q C I R +RNRCQ+C Sbjct 28 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYS-CTRQQNCPIDRTSRNRCQHC 86 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKI 114 RL+KC+A+GMSRDAV+FGR+ K+++ + Sbjct 87 RLQKCLALGMSRDAVKFGRMSKKQRDSL 114 > cel:F44A6.2 sex-1; Signal Element on X family member (sex-1); K08701 nuclear receptor subfamily 1 group D member 3 Length=534 Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 53/74 (71%), Positives = 61/74 (82%), Gaps = 1/74 (1%) Query 29 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRL 88 C+VCGDKASG+HYGV SCEGCKGFFRRSIQ++I YR C K Q C I R +RNRCQYCR Sbjct 150 FCKVCGDKASGYHYGVTSCEGCKGFFRRSIQRKIDYR-CLKQQVCEIKRESRNRCQYCRF 208 Query 89 KKCIAVGMSRDAVR 102 KKC+ GMS+D+VR Sbjct 209 KKCLDSGMSKDSVR 222 > hsa:6097 RORC, MGC129539, NR1F3, RORG, RZR-GAMMA, RZRG, TOR; RAR-related orphan receptor C; K08534 RAR-related orphan receptor gamma Length=497 Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 51/88 (57%), Positives = 69/88 (78%), Gaps = 1/88 (1%) Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86 + C++CGDK+SG HYGV +CEGCKGFFRRS + Y CT+ Q C I R +RNRCQ+C Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYS-CTRQQNCPIDRTSRNRCQHC 65 Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKI 114 RL+KC+A+GMSRDAV+FGR+ K+++ + Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSL 93 > dre:100034753 rargb, RARgamma-B; retinoic acid receptor, gamma b Length=489 Score = 112 bits (280), Expect = 5e-25, Method: Composition-based stats. Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 1/76 (1%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+ Sbjct 65 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVY-TCHRDKNCQINKVTRNRCQYCRLR 123 Query 90 KCIAVGMSRDAVRFGR 105 KC VGMS++AVR R Sbjct 124 KCFEVGMSKEAVRNDR 139 > dre:30606 rarga, MGC109801, NR1B3, etID309710.23, etID33387.23, rarg, rarg2, wu:fb01e02, wu:fb01f03, wu:fc35a09; retinoic acid receptor gamma a; K08529 retinoic acid receptor gamma Length=499 Score = 112 bits (280), Expect = 6e-25, Method: Composition-based stats. Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 1/76 (1%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+ Sbjct 77 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVY-TCHRDKNCQINKVTRNRCQYCRLQ 135 Query 90 KCIAVGMSRDAVRFGR 105 KC VGMS++AVR R Sbjct 136 KCFEVGMSKEAVRNDR 151 > cel:Y104H12A.1 nhr-41; Nuclear Hormone Receptor family member (nhr-41) Length=657 Score = 108 bits (270), Expect = 7e-24, Method: Composition-based stats. Identities = 50/101 (49%), Positives = 68/101 (67%), Gaps = 9/101 (8%) Query 7 HHHGSSKQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRP 66 H +GSS++S + LC VCGDKASG HYG SCEGCKGFF+RSI++ I Y Sbjct 179 HTNGSSERS--------ENCGELCVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGY-V 229 Query 67 CTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVP 107 C + C + + +RNRCQYCRL+KC+++GM ++V+ R P Sbjct 230 CRSQKDCPVTKFHRNRCQYCRLRKCLSMGMRSESVQAERRP 270 > dre:569321 nr2c2, TR4, gb:dq017625, im:6911408; nuclear receptor subfamily 2, group C, member 2; K08544 testicular receptor 4 Length=623 Score = 108 bits (270), Expect = 7e-24, Method: Composition-based stats. Identities = 47/96 (48%), Positives = 67/96 (69%), Gaps = 5/96 (5%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 C VCGDKASG HYG SCEGCKGFF+RS+++ + Y C NQ C I + +RNRCQ+CRL+ Sbjct 147 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKSLTYS-CRSNQDCVINKHHRNRCQFCRLR 205 Query 90 KCIAVGMSRDAVRFGR----VPKREKAKILAAMQKV 121 KC+ +GM ++V+ R +P+ + A A+ +K+ Sbjct 206 KCLEMGMKMESVQSERKPIDLPREKPANCAASTEKI 241 > hsa:7182 NR2C2, TAK1, TR2R1, TR4, hTAK1; nuclear receptor subfamily 2, group C, member 2; K08544 testicular receptor 4 Length=615 Score = 108 bits (269), Expect = 9e-24, Method: Composition-based stats. Identities = 50/91 (54%), Positives = 64/91 (70%), Gaps = 4/91 (4%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 C VCGDKASG HYG SCEGCKGFF+RS+++ + Y C NQ C I + +RNRCQ+CRLK Sbjct 136 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYS-CRSNQDCIINKHHRNRCQFCRLK 194 Query 90 KCIAVGMSRDAVRFGRVP---KREKAKILAA 117 KC+ +GM ++V+ R P +REK AA Sbjct 195 KCLEMGMKMESVQSERKPFDVQREKPSNCAA 225 > xla:399081 rara, nr1b1, rara2a; retinoic acid receptor, alpha; K08527 retinoic acid receptor alpha Length=448 Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 11/122 (9%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 C VC DK+SG+HYGV +CEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+ Sbjct 77 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYT-CHRDKNCIINKVTRNRCQYCRLQ 135 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGHNISVSIAKAHE 149 KC VGMS+++VR R K+++ + M+ ++ + ++ + KAH+ Sbjct 136 KCFEVGMSKESVRNDRNKKKKEPPKVDVMESY----------VLSPETQDLIEKVRKAHK 185 Query 150 ET 151 ET Sbjct 186 ET 187 > hsa:5916 RARG, NR1B3, RARC; retinoic acid receptor, gamma; K08529 retinoic acid receptor gamma Length=454 Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 47/73 (64%), Positives = 59/73 (80%), Gaps = 1/73 (1%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+ Sbjct 90 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYT-CHRDKNCIINKVTRNRCQYCRLQ 148 Query 90 KCIAVGMSRDAVR 102 KC VGMS++AVR Sbjct 149 KCFEVGMSKEAVR 161 > xla:397983 rarg, nr1b3; retinoic acid receptor, gamma; K08529 retinoic acid receptor gamma Length=442 Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 76/129 (58%), Gaps = 24/129 (18%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQ+CRL+ Sbjct 76 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYT-CHRDKNCQINKVTRNRCQFCRLQ 134 Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGHNISVS------ 143 KC VGMS++AVR R N + +VL D + + Sbjct 135 KCFQVGMSKEAVRNDR----------------NKKKKEIKEEVVLPDSYEMPPEMEELIQ 178 Query 144 -IAKAHEET 151 ++KAH+ET Sbjct 179 KVSKAHQET 187 > hsa:6257 RXRB, DAUDI6, H-2RIIBP, MGC1831, NR2B2, RCoR-1; retinoid X receptor, beta; K08525 retinoid X receptor beta Length=533 Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats. Identities = 44/83 (53%), Positives = 64/83 (77%), Gaps = 1/83 (1%) Query 29 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRL 88 LC +CGD++SG HYGV+SCEGCKGFF+R+I++++ Y C N+ C++ + RNRCQYCR Sbjct 204 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYS-CRDNKDCTVDKRQRNRCQYCRY 262 Query 89 KKCIAVGMSRDAVRFGRVPKREK 111 +KC+A GM R+AV+ R ++K Sbjct 263 QKCLATGMKREAVQEERQRGKDK 285 > mmu:19411 Rarg, AI385767, MGC11555, MGC18523, Nr1b3, RARD, RARgamma2; retinoic acid receptor, gamma; K08529 retinoic acid receptor gamma Length=447 Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 1/76 (1%) Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89 C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+ Sbjct 79 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYT-CHRDKNCIINKVTRNRCQYCRLQ 137 Query 90 KCIAVGMSRDAVRFGR 105 KC VGMS++AVR R Sbjct 138 KCFEVGMSKEAVRNDR 153 > hsa:2063 NR2F6, EAR-2, EAR2, ERBAL2; nuclear receptor subfamily 2, group F, member 6; K08549 nuclear receptor subfamily 2 group F member 6 Length=404 Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 2/128 (1%) Query 20 DYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRIN 79 D E G V C VCGDK+SG HYGV +CEGCK FF+RSI++ + Y C N+ C I + + Sbjct 46 DEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYT-CRSNRDCQIDQHH 104 Query 80 RNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDK-ALGMVLEDGH 138 RN+CQYCRLKKC VGM ++AV+ GR+P + A+ +L A G L G Sbjct 105 RNQCQYCRLKKCFRVGMRKEAVQRGRIPHSLPGAVAASSGSPPGSALAAVASGGDLFPGQ 164 Query 139 NISVSIAK 146 +S IA+ Sbjct 165 PVSELIAQ 172 Lambda K H 0.323 0.134 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3582056500 Database: egene_temp_file_orthology_annotation_similarity_blast_database_865 Posted date: Sep 17, 2011 11:19 AM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40