bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_2732_orf2
Length=158
Score E
Sequences producing significant alignments: (Bits) Value
hsa:9572 NR1D1, EAR1, THRA1, THRAL, ear-1, hRev; nuclear recep... 172 4e-43
cel:W05B5.3 nhr-85; Nuclear Hormone Receptor family member (nh... 172 5e-43
mmu:217166 Nr1d1, A530070C09Rik, R75201; nuclear receptor subf... 172 5e-43
dre:494487 nr1d1, Eip75B; nuclear receptor subfamily 1, group ... 171 7e-43
hsa:9975 NR1D2, BD73, EAR-1R, RVR; nuclear receptor subfamily ... 171 9e-43
mmu:353187 Nr1d2, RVR, Rev-erb; nuclear receptor subfamily 1, ... 170 2e-42
xla:444369 nr1d1, MGC82865, MGC82881, ear-1, ear1, hrev, thra1... 168 8e-42
dre:402815 nr1d2a, reverbb1; nuclear receptor subfamily 1, gro... 166 4e-41
dre:563150 nr1d4a, gb:dq017622; nuclear receptor subfamily 1, ... 165 7e-41
dre:30271 nr1d2b, reverbb, reverbb2, zgc:92019; nuclear recept... 164 1e-40
dre:571948 nr1d4b, gb:dq017623; nuclear receptor subfamily 1, ... 161 8e-40
hsa:5468 PPARG, CIMT1, GLM1, NR1C3, PPARG1, PPARG2, PPARgamma;... 139 3e-33
mmu:19016 Pparg, Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma, PP... 139 5e-33
dre:30754 ppardb, pparb2; peroxisome proliferator-activated re... 135 4e-32
xla:397769 pparg, xPPAR-gamma; peroxisome proliferator-activat... 134 1e-31
hsa:5467 PPARD, FAAR, MGC3931, NR1C2, NUC1, NUCI, NUCII, PPARB... 131 1e-30
mmu:19015 Ppard, NUC-1, NUC1, Nr1c2, PPAR-beta, PPAR-delta, PP... 130 1e-30
dre:563298 pparaa, ppara3, si:ch211-239e6.3; peroxisome prolif... 130 2e-30
xla:397768 ppard, pparb; peroxisome proliferator-activated rec... 128 7e-30
xla:496107 ppara, PPARalpha, nr1c1, xPPARalpha, xppara; peroxi... 128 1e-29
hsa:6095 RORA, DKFZp686M2414, MGC119326, MGC119329, NR1F1, ROR... 125 5e-29
hsa:5465 PPARA, MGC2237, MGC2452, NR1C1, PPAR, PPARalpha, hPPA... 125 6e-29
mmu:19013 Ppara, 4933429D07Rik, AW742785, Nr1c1, PPAR-alpha, P... 125 6e-29
xla:398843 ppara, MGC68537, nr1c1; peroxisome proliferator act... 125 7e-29
dre:557037 pparg, PPAR[g]; peroxisome proliferator activated r... 125 7e-29
cel:C01H6.5 nhr-23; Nuclear Hormone Receptor family member (nh... 124 2e-28
dre:559245 rorca, rorc, rorg; RAR-related orphan receptor C a 122 3e-28
dre:557714 pparab, PPAR[a], ppara, ppara1, pparal; peroxisome ... 122 3e-28
dre:562258 rorcb, si:ch211-168n16.2; RAR-related orphan recept... 122 5e-28
dre:567943 rorb, nr1f2, rzrb, sb:eu943; RAR-related orphan rec... 122 6e-28
hsa:6096 RORB, NR1F2, ROR-BETA, RZR-BETA, RZRB, bA133M9.1; RAR... 122 6e-28
mmu:225998 Rorb, MGC38728, Nr1f2, RZR-beta, RZRB; RAR-related ... 122 7e-28
mmu:19883 Rora, 9530021D13Rik, Nr1f1, ROR1, ROR2, ROR3, nmf267... 121 1e-27
dre:100004847 RAR-related orphan receptor A-like 121 1e-27
dre:554722 rorab, MGC174539, MGC55954, Rora, wu:fq24g04, zgc:5... 120 2e-27
dre:564951 roraa, RORalpha-B, gb:dq017624, rora2; RAR-related ... 120 2e-27
mmu:19885 Rorc, Nr1f3, RORgamma, TOR, Thor; RAR-related orphan... 119 5e-27
cel:F44A6.2 sex-1; Signal Element on X family member (sex-1); ... 117 2e-26
hsa:6097 RORC, MGC129539, NR1F3, RORG, RZR-GAMMA, RZRG, TOR; R... 115 6e-26
dre:100034753 rargb, RARgamma-B; retinoic acid receptor, gamma b 112 5e-25
dre:30606 rarga, MGC109801, NR1B3, etID309710.23, etID33387.23... 112 6e-25
cel:Y104H12A.1 nhr-41; Nuclear Hormone Receptor family member ... 108 7e-24
dre:569321 nr2c2, TR4, gb:dq017625, im:6911408; nuclear recept... 108 7e-24
hsa:7182 NR2C2, TAK1, TR2R1, TR4, hTAK1; nuclear receptor subf... 108 9e-24
xla:399081 rara, nr1b1, rara2a; retinoic acid receptor, alpha;... 107 2e-23
hsa:5916 RARG, NR1B3, RARC; retinoic acid receptor, gamma; K08... 107 2e-23
xla:397983 rarg, nr1b3; retinoic acid receptor, gamma; K08529 ... 107 2e-23
hsa:6257 RXRB, DAUDI6, H-2RIIBP, MGC1831, NR2B2, RCoR-1; retin... 106 3e-23
mmu:19411 Rarg, AI385767, MGC11555, MGC18523, Nr1b3, RARD, RAR... 106 3e-23
hsa:2063 NR2F6, EAR-2, EAR2, ERBAL2; nuclear receptor subfamil... 106 3e-23
> hsa:9572 NR1D1, EAR1, THRA1, THRAL, ear-1, hRev; nuclear receptor
subfamily 1, group D, member 1; K03728 nuclear receptor
subfamily 1 group D member 1
Length=614
Score = 172 bits (436), Expect = 4e-43, Method: Composition-based stats.
Identities = 75/108 (69%), Positives = 89/108 (82%), Gaps = 0/108 (0%)
Query 12 SKQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQ 71
S S + + +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+
Sbjct 114 SPSKSTSNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNE 173
Query 72 QCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQ 119
CSI+RINRNRCQ CR KKC++VGMSRDAVRFGR+PKREK ++LA MQ
Sbjct 174 NCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQ 221
> cel:W05B5.3 nhr-85; Nuclear Hormone Receptor family member (nhr-85)
Length=514
Score = 172 bits (435), Expect = 5e-43, Method: Composition-based stats.
Identities = 80/134 (59%), Positives = 97/134 (72%), Gaps = 3/134 (2%)
Query 6 HHHHGS---SKQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEI 62
+ HG+ SK ++ + T+LC+VC DKASGFHYGV +CEGCKGFFRRSIQQ+I
Sbjct 86 YSEHGALEGSKSLAKDENASTSAGTILCQVCSDKASGFHYGVFACEGCKGFFRRSIQQKI 145
Query 63 QYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVN 122
YR CT+ + C ILR NRNRCQ CRLKKC+AVGMSRDAVRFGRVPKREKA++ MQK N
Sbjct 146 TYRACTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKREKARMFEEMQKTN 205
Query 123 AHSLDKALGMVLED 136
S + + E+
Sbjct 206 VQSQRDQIAIQYEN 219
> mmu:217166 Nr1d1, A530070C09Rik, R75201; nuclear receptor subfamily
1, group D, member 1; K03728 nuclear receptor subfamily
1 group D member 1
Length=615
Score = 172 bits (435), Expect = 5e-43, Method: Composition-based stats.
Identities = 73/98 (74%), Positives = 86/98 (87%), Gaps = 0/98 (0%)
Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81
+ +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ CSI+RINRN
Sbjct 125 KLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRN 184
Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQ 119
RCQ CR KKC++VGMSRDAVRFGR+PKREK ++LA MQ
Sbjct 185 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQ 222
> dre:494487 nr1d1, Eip75B; nuclear receptor subfamily 1, group
d, member 1; K03728 nuclear receptor subfamily 1 group D member
1
Length=637
Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 73/109 (66%), Positives = 90/109 (82%), Gaps = 0/109 (0%)
Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81
+ +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ C+I+RINRN
Sbjct 120 KLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNETCTIMRINRN 179
Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKAL 130
RCQ CR KKC++VGMSRDAVRFGR+PKREK ++LA MQ + ++ L
Sbjct 180 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQNAMNNMVNNQL 228
> hsa:9975 NR1D2, BD73, EAR-1R, RVR; nuclear receptor subfamily
1, group D, member 2; K08531 nuclear receptor subfamily 1
group D member 2
Length=504
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 97/131 (74%), Gaps = 5/131 (3%)
Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81
+F G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ CSI+R+NRN
Sbjct 20 KFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRN 79
Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGHNIS 141
RCQ CR KKC++VGMSRDAVRFGR+PKREK ++L MQ ++ GH +
Sbjct 80 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFS-----GHLQN 134
Query 142 VSIAKAHEETC 152
++ + HE+T
Sbjct 135 DTLVEHHEQTA 145
> mmu:353187 Nr1d2, RVR, Rev-erb; nuclear receptor subfamily 1,
group D, member 2; K08531 nuclear receptor subfamily 1 group
D member 2
Length=576
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 98/130 (75%), Gaps = 5/130 (3%)
Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81
+F G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ CSI+R+NRN
Sbjct 95 KFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRN 154
Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGHNIS 141
RCQ CR KKC++VGMSRDAVRFGR+PKREK ++L MQ ++ GH +
Sbjct 155 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNTQF-----SGHLQN 209
Query 142 VSIAKAHEET 151
++A+ H+++
Sbjct 210 DTLAEQHDQS 219
> xla:444369 nr1d1, MGC82865, MGC82881, ear-1, ear1, hrev, thra1,
thral; nuclear receptor subfamily 1, group D, member 1;
K03728 nuclear receptor subfamily 1 group D member 1
Length=519
Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 72/103 (69%), Positives = 86/103 (83%), Gaps = 0/103 (0%)
Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81
+ +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+ CSI+RINRN
Sbjct 107 KLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNETCSIVRINRN 166
Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAH 124
RCQ CR +KC++VGMSRDAVRFGR+PKREK ++LA M H
Sbjct 167 RCQQCRFRKCLSVGMSRDAVRFGRIPKREKQRMLAEMHSAMNH 209
> dre:402815 nr1d2a, reverbb1; nuclear receptor subfamily 1, group
D, member 2a
Length=504
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 84/98 (85%), Gaps = 0/98 (0%)
Query 22 EFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRN 81
+ +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C K + C+I+RINRN
Sbjct 78 KLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKTESCTIVRINRN 137
Query 82 RCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQ 119
RCQ CR KKC++VGMSRDAVRFGR+PKREK ++L MQ
Sbjct 138 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLLEMQ 175
> dre:563150 nr1d4a, gb:dq017622; nuclear receptor subfamily 1,
group D, member 4a
Length=570
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 88/114 (77%), Gaps = 0/114 (0%)
Query 25 GTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQ 84
G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ I Y+ C KN+ C I+R+NRNRCQ
Sbjct 109 GMVLLCKVCGDIASGFHYGVHACEGCKGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQ 168
Query 85 YCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGH 138
+CR KKC++VGMSRDAVRFGR+PKREK ++L MQ + ++GM H
Sbjct 169 HCRFKKCLSVGMSRDAVRFGRIPKREKQRLLDEMQSYMNSLNESSMGMETSPQH 222
> dre:30271 nr1d2b, reverbb, reverbb2, zgc:92019; nuclear receptor
subfamily 1, group D, member 2b; K08531 nuclear receptor
subfamily 1 group D member 2
Length=578
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 71/104 (68%), Positives = 85/104 (81%), Gaps = 0/104 (0%)
Query 12 SKQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQ 71
S S++ + +G +LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ IQY+ C KN+
Sbjct 68 SLSSTKSGITKINGLVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNE 127
Query 72 QCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKIL 115
C I+RINRNRCQ CR KKC+ VGMSRDAVRFGR+PKREK ++L
Sbjct 128 SCPIMRINRNRCQQCRFKKCLLVGMSRDAVRFGRIPKREKQRML 171
> dre:571948 nr1d4b, gb:dq017623; nuclear receptor subfamily 1,
group D, member 4b
Length=576
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+LC+VCGD ASGFHYGVH+CEGCKGFFRRSIQQ I Y+ C KN+ C I+R+NRNRCQ+C
Sbjct 116 VLLCKVCGDIASGFHYGVHACEGCKGFFRRSIQQNIHYKMCVKNENCLIMRMNRNRCQHC 175
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGM 132
R KKC++VGMSRDAVRFGR+PKREK ++L MQ +SL+++ M
Sbjct 176 RFKKCLSVGMSRDAVRFGRIPKREKQRLLDEMQSY-MNSLNESASM 220
> hsa:5468 PPARG, CIMT1, GLM1, NR1C3, PPARG1, PPARG2, PPARgamma;
peroxisome proliferator-activated receptor gamma; K08530
peroxisome proliferator-activated receptor gamma
Length=477
Score = 139 bits (351), Expect = 3e-33, Method: Composition-based stats.
Identities = 67/123 (54%), Positives = 88/123 (71%), Gaps = 7/123 (5%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C N C I + +RN+CQYCR +
Sbjct 111 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLN--CRIHKKSRNKCQYCRFQ 168
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQ----KVNAHSLD-KALGMVLEDGHNISVSI 144
KC+AVGMS +A+RFGR+P+ EK K+LA + ++N S D +AL L D + S +
Sbjct 169 KCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPL 228
Query 145 AKA 147
KA
Sbjct 229 TKA 231
> mmu:19016 Pparg, Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma,
PPARgamma2; peroxisome proliferator activated receptor gamma;
K08530 peroxisome proliferator-activated receptor gamma
Length=475
Score = 139 bits (349), Expect = 5e-33, Method: Composition-based stats.
Identities = 67/123 (54%), Positives = 88/123 (71%), Gaps = 7/123 (5%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C N C I + +RN+CQYCR +
Sbjct 109 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLN--CRIHKKSRNKCQYCRFQ 166
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQ----KVNAHSLD-KALGMVLEDGHNISVSI 144
KC+AVGMS +A+RFGR+P+ EK K+LA + ++N S D +AL L D + S +
Sbjct 167 KCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPL 226
Query 145 AKA 147
KA
Sbjct 227 TKA 229
> dre:30754 ppardb, pparb2; peroxisome proliferator-activated
receptor delta b; K04504 peroxisome proliferator-activated receptor
delta
Length=517
Score = 135 bits (341), Expect = 4e-32, Method: Composition-based stats.
Identities = 54/94 (57%), Positives = 76/94 (80%), Gaps = 2/94 (2%)
Query 25 GTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQ 84
G V CR+CGDKASGFHYGVH+CEGCKGFFRR+I+ +++Y C + C + + +RN+CQ
Sbjct 147 GLNVECRICGDKASGFHYGVHACEGCKGFFRRTIRMKLEYERCER--ACKVQKKSRNKCQ 204
Query 85 YCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAM 118
YCR +KC+A+GMS DA+R+GR+P+ EK K++A +
Sbjct 205 YCRFQKCLALGMSHDAIRYGRMPEAEKKKLVAGL 238
> xla:397769 pparg, xPPAR-gamma; peroxisome proliferator-activated
receptor gamma; K08530 peroxisome proliferator-activated
receptor gamma
Length=477
Score = 134 bits (337), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/123 (52%), Positives = 87/123 (70%), Gaps = 7/123 (5%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C N C I + +RN+CQ+CR +
Sbjct 113 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYERCDLN--CRIHKKSRNKCQFCRFQ 170
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQ----KVNAHSLD-KALGMVLEDGHNISVSI 144
KC+AVGMS +A+RFGR+P+ EK K+LA + ++N S D + L L D + S +
Sbjct 171 KCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADQRVLAKHLYDSYVKSFPL 230
Query 145 AKA 147
KA
Sbjct 231 TKA 233
> hsa:5467 PPARD, FAAR, MGC3931, NR1C2, NUC1, NUCI, NUCII, PPARB;
peroxisome proliferator-activated receptor delta; K04504
peroxisome proliferator-activated receptor delta
Length=441
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 75/89 (84%), Gaps = 2/89 (2%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ +++Y C ++ C I + NRN+CQYCR +
Sbjct 74 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERS--CKIQKKNRNKCQYCRFQ 131
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAM 118
KC+A+GMS +A+RFGR+P+ EK K++A +
Sbjct 132 KCLALGMSHNAIRFGRMPEAEKRKLVAGL 160
> mmu:19015 Ppard, NUC-1, NUC1, Nr1c2, PPAR-beta, PPAR-delta,
PPAR[b], PPARdelta, Pparb, Pparb/d; peroxisome proliferator
activator receptor delta; K04504 peroxisome proliferator-activated
receptor delta
Length=440
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 75/89 (84%), Gaps = 2/89 (2%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ +++Y C ++ C I + NRN+CQYCR +
Sbjct 73 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKC--DRICKIQKKNRNKCQYCRFQ 130
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAM 118
KC+A+GMS +A+RFGR+P+ EK K++A +
Sbjct 131 KCLALGMSHNAIRFGRMPEAEKRKLVAGL 159
> dre:563298 pparaa, ppara3, si:ch211-239e6.3; peroxisome proliferator-activated
receptor alpha a
Length=470
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 74/90 (82%), Gaps = 2/90 (2%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
T+ CRVC D+ASGFHYGVH+CEGCKGFFRR+I+ +++Y C +N C I + NRN+CQYC
Sbjct 96 TLECRVCADRASGFHYGVHACEGCKGFFRRTIRLKLEYDKCERN--CKIQKKNRNKCQYC 153
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILA 116
R +KC+AVGMS +A+RFGR+P+ EK ++ A
Sbjct 154 RFRKCLAVGMSHNAIRFGRIPQSEKQRLKA 183
> xla:397768 ppard, pparb; peroxisome proliferator-activated receptor
delta
Length=396
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 80/105 (76%), Gaps = 2/105 (1%)
Query 13 KQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQ 72
+Q S +++ +V C++CGD+ASGFHYGVH+CEGCKGFFRR+I+ +QY C +N
Sbjct 14 EQPSTPLEHQETSQSVDCKICGDRASGFHYGVHACEGCKGFFRRTIRMRLQYEHCDRN-- 71
Query 73 CSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAA 117
C I + NRN+CQYCR KC+++GMS +A+RFGR+P+ EK K++ A
Sbjct 72 CKIQKKNRNKCQYCRFNKCLSLGMSHNAIRFGRMPESEKRKLVQA 116
> xla:496107 ppara, PPARalpha, nr1c1, xPPARalpha, xppara; peroxisome
proliferator-activated receptor alpha
Length=469
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 71/87 (81%), Gaps = 2/87 (2%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C + C I + NRN+CQYCR +
Sbjct 104 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLVYDQCER--MCKIQKKNRNKCQYCRFE 161
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILA 116
KC+ VGMS +A+RFGR+P+ EKAK+ A
Sbjct 162 KCLNVGMSHNAIRFGRMPRSEKAKLKA 188
> hsa:6095 RORA, DKFZp686M2414, MGC119326, MGC119329, NR1F1, ROR1,
ROR2, ROR3, RZR-ALPHA, RZRA; RAR-related orphan receptor
A; K08532 RAR-related orphan receptor alpha
Length=548
Score = 125 bits (314), Expect = 5e-29, Method: Composition-based stats.
Identities = 54/91 (59%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R +RNRCQ+CRL+
Sbjct 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHCRLQ 156
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120
KC+AVGMSRDAV+FGR+ K+++ + A +QK
Sbjct 157 KCLAVGMSRDAVKFGRMSKKQRDSLYAEVQK 187
> hsa:5465 PPARA, MGC2237, MGC2452, NR1C1, PPAR, PPARalpha, hPPAR;
peroxisome proliferator-activated receptor alpha; K07294
peroxisome proliferator-activated receptor alpha
Length=468
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 73/89 (82%), Gaps = 2/89 (2%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CR+CGDKASG+HYGVH+CEGCKGFFRR+I+ ++ Y C ++ C I + NRN+CQYCR
Sbjct 102 CRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFH 159
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAM 118
KC++VGMS +A+RFGR+P+ EKAK+ A +
Sbjct 160 KCLSVGMSHNAIRFGRMPRSEKAKLKAEI 188
> mmu:19013 Ppara, 4933429D07Rik, AW742785, Nr1c1, PPAR-alpha,
PPARalpha, Ppar; peroxisome proliferator activated receptor
alpha; K07294 peroxisome proliferator-activated receptor alpha
Length=468
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 73/89 (82%), Gaps = 2/89 (2%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CR+CGDKASG+HYGVH+CEGCKGFFRR+I+ ++ Y C ++ C I + NRN+CQYCR
Sbjct 102 CRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKC--DRSCKIQKKNRNKCQYCRFH 159
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAM 118
KC++VGMS +A+RFGR+P+ EKAK+ A +
Sbjct 160 KCLSVGMSHNAIRFGRMPRSEKAKLKAEI 188
> xla:398843 ppara, MGC68537, nr1c1; peroxisome proliferator activated
receptor alpha; K07294 peroxisome proliferator-activated
receptor alpha
Length=474
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 70/87 (80%), Gaps = 2/87 (2%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CRVC DKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C + C I + NRN+CQYCR +
Sbjct 109 CRVCSDKASGFHYGVHACEGCKGFFRRTIRLKLVYDRCER--MCKIQKKNRNKCQYCRFE 166
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILA 116
KC+ VGMS +A+RFGR+P+ EKAK+ A
Sbjct 167 KCLNVGMSHNAIRFGRMPRSEKAKLKA 193
> dre:557037 pparg, PPAR[g]; peroxisome proliferator activated
receptor gamma; K08530 peroxisome proliferator-activated receptor
gamma
Length=527
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 71/87 (81%), Gaps = 2/87 (2%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
CRVCGDKASGFHYGVH+CEGCKGFFRR+I+ ++ Y C + C I + +RN+CQYCR +
Sbjct 155 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLVYDHC--DLHCRIHKKSRNKCQYCRFQ 212
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILA 116
KC+ VGMS +A+RFGR+P+ EK K+LA
Sbjct 213 KCLMVGMSHNAIRFGRMPQAEKEKLLA 239
> cel:C01H6.5 nhr-23; Nuclear Hormone Receptor family member (nhr-23);
K08701 nuclear receptor subfamily 1 group D member
3
Length=439
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+ C+VCGDK+SG HYGV +CEGCKGFFRRS + Y+ C + + C + R+NRNRCQYC
Sbjct 9 VIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVNYQ-CPRQKNCVVDRVNRNRCQYC 67
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKI 114
RLKKCI +GMSRDAV+FGR+ K+++ K+
Sbjct 68 RLKKCIELGMSRDAVKFGRMSKKQREKV 95
> dre:559245 rorca, rorc, rorg; RAR-related orphan receptor C
a
Length=479
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+ C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C++ + C I R NRNRCQ+C
Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYS-CSRQRNCIIDRTNRNRCQHC 65
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120
RL+KC+A+GMSRDAV+FGR+ K+++ + A +QK
Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQK 99
> dre:557714 pparab, PPAR[a], ppara, ppara1, pparal; peroxisome
proliferator activated receptor alpha b; K07294 peroxisome
proliferator-activated receptor alpha
Length=459
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 78/99 (78%), Gaps = 4/99 (4%)
Query 22 EFDGTTV--LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRIN 79
EF T++ CRVC D+ASG+HYGVH+CEGCKGFFRR+I+ +++Y C + +C I + N
Sbjct 87 EFTSTSLNLECRVCSDRASGYHYGVHACEGCKGFFRRTIRLKLEYDKCER--RCKIQKKN 144
Query 80 RNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAM 118
RN+CQYCR +KC++VGMS +A+RFGR+P+ EK ++ A +
Sbjct 145 RNKCQYCRFQKCLSVGMSHNAIRFGRMPQSEKLRLKAEI 183
> dre:562258 rorcb, si:ch211-168n16.2; RAR-related orphan receptor
C b
Length=480
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 80/115 (69%), Gaps = 5/115 (4%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+ C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C++ + C I R NRNRCQ+C
Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYS-CSRQRNCLIDRTNRNRCQHC 65
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMV----LEDG 137
RL+KC+A+GMSRDAV+FGR+ K+++ + A +Q+ S D G+ EDG
Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQRHQQLSQDCLAGLTGRDEAEDG 120
> dre:567943 rorb, nr1f2, rzrb, sb:eu943; RAR-related orphan receptor
B; K08533 RAR-related orphan receptor beta
Length=466
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+ C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R NRNRCQ+C
Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYS-CPRQRNCLIDRTNRNRCQHC 65
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120
RL+KC+A+GMSRDAV+FGR+ K+++ + A +QK
Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQK 99
> hsa:6096 RORB, NR1F2, ROR-BETA, RZR-BETA, RZRB, bA133M9.1; RAR-related
orphan receptor B; K08533 RAR-related orphan receptor
beta
Length=459
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+ C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R NRNRCQ+C
Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYS-CPRQRNCLIDRTNRNRCQHC 65
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120
RL+KC+A+GMSRDAV+FGR+ K+++ + A +QK
Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQK 99
> mmu:225998 Rorb, MGC38728, Nr1f2, RZR-beta, RZRB; RAR-related
orphan receptor beta; K08533 RAR-related orphan receptor beta
Length=459
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+ C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R NRNRCQ+C
Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYS-CPRQRNCLIDRTNRNRCQHC 65
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120
RL+KC+A+GMSRDAV+FGR+ K+++ + A +QK
Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQK 99
> mmu:19883 Rora, 9530021D13Rik, Nr1f1, ROR1, ROR2, ROR3, nmf267,
sg, staggerer; RAR-related orphan receptor alpha; K08532
RAR-related orphan receptor alpha
Length=523
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Query 28 VLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCR 87
+ C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R +RNRCQ+CR
Sbjct 71 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYS-CPRQKNCLIDRTSRNRCQHCR 129
Query 88 LKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120
L+KC+AVGMSRDAV+FGR+ K+++ + A +QK
Sbjct 130 LQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQK 162
> dre:100004847 RAR-related orphan receptor A-like
Length=433
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+ C++CGDK+SG HYGV +CEGCKGFFRRS +QY C++ C I R +RNRCQ C
Sbjct 8 VIPCKICGDKSSGVHYGVITCEGCKGFFRRSQSSSVQYS-CSRQSNCPIDRASRNRCQSC 66
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAH 124
RLKKC+A GMSRDAV+FGR+ KR++ + A +++ H
Sbjct 67 RLKKCVAQGMSRDAVKFGRMSKRQRDSLFAEVERHRQH 104
> dre:554722 rorab, MGC174539, MGC55954, Rora, wu:fq24g04, zgc:55954;
RAR-related orphan receptor A, paralog b; K08532 RAR-related
orphan receptor alpha
Length=474
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
++ C++CGDK+SG HYGV +CEGCKGFFR S Q + Y C + + C I R +RNRCQ+C
Sbjct 14 SIPCKICGDKSSGIHYGVITCEGCKGFFRGSQQGTVSYS-CPRQKSCLIDRTSRNRCQHC 72
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120
RL+KC+AVGMSRDAV+FGR+ K+++ + A +QK
Sbjct 73 RLQKCLAVGMSRDAVKFGRMSKKQRDSLFAEVQK 106
> dre:564951 roraa, RORalpha-B, gb:dq017624, rora2; RAR-related
orphan receptor A, paralog a; K08532 RAR-related orphan receptor
alpha
Length=468
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Query 28 VLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCR 87
+ C++CGDK+SG HYGV +CEGCKGFFRRS Q Y C + + C I R +RNRCQ+CR
Sbjct 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYS-CPRQKNCLIDRTSRNRCQHCR 74
Query 88 LKKCIAVGMSRDAVRFGRVPKREKAKILAAMQK 120
L+KC+AVGMSRDAV+FGR+ K+++ + A +QK
Sbjct 75 LQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQK 107
> mmu:19885 Rorc, Nr1f3, RORgamma, TOR, Thor; RAR-related orphan
receptor gamma; K08534 RAR-related orphan receptor gamma
Length=516
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+ C++CGDK+SG HYGV +CEGCKGFFRRS Q + Y CT+ Q C I R +RNRCQ+C
Sbjct 28 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYS-CTRQQNCPIDRTSRNRCQHC 86
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKI 114
RL+KC+A+GMSRDAV+FGR+ K+++ +
Sbjct 87 RLQKCLALGMSRDAVKFGRMSKKQRDSL 114
> cel:F44A6.2 sex-1; Signal Element on X family member (sex-1);
K08701 nuclear receptor subfamily 1 group D member 3
Length=534
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query 29 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRL 88
C+VCGDKASG+HYGV SCEGCKGFFRRSIQ++I YR C K Q C I R +RNRCQYCR
Sbjct 150 FCKVCGDKASGYHYGVTSCEGCKGFFRRSIQRKIDYR-CLKQQVCEIKRESRNRCQYCRF 208
Query 89 KKCIAVGMSRDAVR 102
KKC+ GMS+D+VR
Sbjct 209 KKCLDSGMSKDSVR 222
> hsa:6097 RORC, MGC129539, NR1F3, RORG, RZR-GAMMA, RZRG, TOR;
RAR-related orphan receptor C; K08534 RAR-related orphan receptor
gamma
Length=497
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Query 27 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYC 86
+ C++CGDK+SG HYGV +CEGCKGFFRRS + Y CT+ Q C I R +RNRCQ+C
Sbjct 7 VIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYS-CTRQQNCPIDRTSRNRCQHC 65
Query 87 RLKKCIAVGMSRDAVRFGRVPKREKAKI 114
RL+KC+A+GMSRDAV+FGR+ K+++ +
Sbjct 66 RLQKCLALGMSRDAVKFGRMSKKQRDSL 93
> dre:100034753 rargb, RARgamma-B; retinoic acid receptor, gamma
b
Length=489
Score = 112 bits (280), Expect = 5e-25, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+
Sbjct 65 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVY-TCHRDKNCQINKVTRNRCQYCRLR 123
Query 90 KCIAVGMSRDAVRFGR 105
KC VGMS++AVR R
Sbjct 124 KCFEVGMSKEAVRNDR 139
> dre:30606 rarga, MGC109801, NR1B3, etID309710.23, etID33387.23,
rarg, rarg2, wu:fb01e02, wu:fb01f03, wu:fc35a09; retinoic
acid receptor gamma a; K08529 retinoic acid receptor gamma
Length=499
Score = 112 bits (280), Expect = 6e-25, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+
Sbjct 77 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVY-TCHRDKNCQINKVTRNRCQYCRLQ 135
Query 90 KCIAVGMSRDAVRFGR 105
KC VGMS++AVR R
Sbjct 136 KCFEVGMSKEAVRNDR 151
> cel:Y104H12A.1 nhr-41; Nuclear Hormone Receptor family member
(nhr-41)
Length=657
Score = 108 bits (270), Expect = 7e-24, Method: Composition-based stats.
Identities = 50/101 (49%), Positives = 68/101 (67%), Gaps = 9/101 (8%)
Query 7 HHHGSSKQSSRHHDYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRP 66
H +GSS++S + LC VCGDKASG HYG SCEGCKGFF+RSI++ I Y
Sbjct 179 HTNGSSERS--------ENCGELCVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGY-V 229
Query 67 CTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVP 107
C + C + + +RNRCQYCRL+KC+++GM ++V+ R P
Sbjct 230 CRSQKDCPVTKFHRNRCQYCRLRKCLSMGMRSESVQAERRP 270
> dre:569321 nr2c2, TR4, gb:dq017625, im:6911408; nuclear receptor
subfamily 2, group C, member 2; K08544 testicular receptor
4
Length=623
Score = 108 bits (270), Expect = 7e-24, Method: Composition-based stats.
Identities = 47/96 (48%), Positives = 67/96 (69%), Gaps = 5/96 (5%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
C VCGDKASG HYG SCEGCKGFF+RS+++ + Y C NQ C I + +RNRCQ+CRL+
Sbjct 147 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKSLTYS-CRSNQDCVINKHHRNRCQFCRLR 205
Query 90 KCIAVGMSRDAVRFGR----VPKREKAKILAAMQKV 121
KC+ +GM ++V+ R +P+ + A A+ +K+
Sbjct 206 KCLEMGMKMESVQSERKPIDLPREKPANCAASTEKI 241
> hsa:7182 NR2C2, TAK1, TR2R1, TR4, hTAK1; nuclear receptor subfamily
2, group C, member 2; K08544 testicular receptor 4
Length=615
Score = 108 bits (269), Expect = 9e-24, Method: Composition-based stats.
Identities = 50/91 (54%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
C VCGDKASG HYG SCEGCKGFF+RS+++ + Y C NQ C I + +RNRCQ+CRLK
Sbjct 136 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYS-CRSNQDCIINKHHRNRCQFCRLK 194
Query 90 KCIAVGMSRDAVRFGRVP---KREKAKILAA 117
KC+ +GM ++V+ R P +REK AA
Sbjct 195 KCLEMGMKMESVQSERKPFDVQREKPSNCAA 225
> xla:399081 rara, nr1b1, rara2a; retinoic acid receptor, alpha;
K08527 retinoic acid receptor alpha
Length=448
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 11/122 (9%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
C VC DK+SG+HYGV +CEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+
Sbjct 77 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYT-CHRDKNCIINKVTRNRCQYCRLQ 135
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGHNISVSIAKAHE 149
KC VGMS+++VR R K+++ + M+ ++ + ++ + KAH+
Sbjct 136 KCFEVGMSKESVRNDRNKKKKEPPKVDVMESY----------VLSPETQDLIEKVRKAHK 185
Query 150 ET 151
ET
Sbjct 186 ET 187
> hsa:5916 RARG, NR1B3, RARC; retinoic acid receptor, gamma; K08529
retinoic acid receptor gamma
Length=454
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+
Sbjct 90 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYT-CHRDKNCIINKVTRNRCQYCRLQ 148
Query 90 KCIAVGMSRDAVR 102
KC VGMS++AVR
Sbjct 149 KCFEVGMSKEAVR 161
> xla:397983 rarg, nr1b3; retinoic acid receptor, gamma; K08529
retinoic acid receptor gamma
Length=442
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 76/129 (58%), Gaps = 24/129 (18%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQ+CRL+
Sbjct 76 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYT-CHRDKNCQINKVTRNRCQFCRLQ 134
Query 90 KCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDKALGMVLEDGHNISVS------ 143
KC VGMS++AVR R N + +VL D + +
Sbjct 135 KCFQVGMSKEAVRNDR----------------NKKKKEIKEEVVLPDSYEMPPEMEELIQ 178
Query 144 -IAKAHEET 151
++KAH+ET
Sbjct 179 KVSKAHQET 187
> hsa:6257 RXRB, DAUDI6, H-2RIIBP, MGC1831, NR2B2, RCoR-1; retinoid
X receptor, beta; K08525 retinoid X receptor beta
Length=533
Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Query 29 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRL 88
LC +CGD++SG HYGV+SCEGCKGFF+R+I++++ Y C N+ C++ + RNRCQYCR
Sbjct 204 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYS-CRDNKDCTVDKRQRNRCQYCRY 262
Query 89 KKCIAVGMSRDAVRFGRVPKREK 111
+KC+A GM R+AV+ R ++K
Sbjct 263 QKCLATGMKREAVQEERQRGKDK 285
> mmu:19411 Rarg, AI385767, MGC11555, MGC18523, Nr1b3, RARD, RARgamma2;
retinoic acid receptor, gamma; K08529 retinoic acid
receptor gamma
Length=447
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query 30 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRINRNRCQYCRLK 89
C VC DK+SG+HYGV SCEGCKGFFRRSIQ+ + Y C +++ C I ++ RNRCQYCRL+
Sbjct 79 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYT-CHRDKNCIINKVTRNRCQYCRLQ 137
Query 90 KCIAVGMSRDAVRFGR 105
KC VGMS++AVR R
Sbjct 138 KCFEVGMSKEAVRNDR 153
> hsa:2063 NR2F6, EAR-2, EAR2, ERBAL2; nuclear receptor subfamily
2, group F, member 6; K08549 nuclear receptor subfamily
2 group F member 6
Length=404
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query 20 DYEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQEIQYRPCTKNQQCSILRIN 79
D E G V C VCGDK+SG HYGV +CEGCK FF+RSI++ + Y C N+ C I + +
Sbjct 46 DEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYT-CRSNRDCQIDQHH 104
Query 80 RNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAKILAAMQKVNAHSLDK-ALGMVLEDGH 138
RN+CQYCRLKKC VGM ++AV+ GR+P + A+ +L A G L G
Sbjct 105 RNQCQYCRLKKCFRVGMRKEAVQRGRIPHSLPGAVAASSGSPPGSALAAVASGGDLFPGQ 164
Query 139 NISVSIAK 146
+S IA+
Sbjct 165 PVSELIAQ 172
Lambda K H
0.323 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3582056500
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40