bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_2950_orf1
Length=137
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_094670 eukaryotic translation initiation factor 3, ... 145 4e-35
bbo:BBOV_IV004370 23.m06488; translation initiation factor 3 s... 82.8 3e-16
tpv:TP01_0314 eukaryotic translation initiation factor 3 subun... 82.4 4e-16
pfa:MAL8P1.83 eukaryotictranslation initiation factor, putativ... 81.6 7e-16
xla:446311 eif3s4, MGC83369, eIF3g-A, eif3s4-A; eukaryotic tra... 72.4 4e-13
xla:447749 eIF3g-B, eif3s4-B; MGC83338 protein; K03248 transla... 72.4 4e-13
mmu:53356 Eif3g, 44kDa, D0Jmb4, Eif3s4, TU-189B2, eIF3-p44, p4... 68.6 5e-12
hsa:8666 EIF3G, EIF3-P42, EIF3S4, eIF3-delta, eIF3-p44; eukary... 68.2 7e-12
dre:393974 eif3g, MGC56553, eif3s4, zgc:56553; eukaryotic tran... 66.6 2e-11
cpv:cgd4_1030 eukaryotic translation initiation factor ; K0324... 65.9 3e-11
ath:AT3G11400 EIF3G1; eukaryotic translation initiation factor... 63.9 1e-10
cel:F22B5.2 eif-3.G; Eukaryotic Initiation Factor family membe... 58.2 7e-09
ath:AT5G06000 EIF3G2; EIF3G2; RNA binding / translation initia... 56.2 3e-08
cel:F26A3.2 ncbp-2; Nuclear Cap-Binding Protein family member ... 50.4 2e-06
ath:AT3G10400 RNA recognition motif (RRM)-containing protein; ... 46.2 3e-05
xla:100380998 ncbp2; nuclear cap binding protein subunit 2, 20... 45.4 5e-05
ath:AT2G44710 RNA recognition motif (RRM)-containing protein 44.7 9e-05
mmu:67197 Zcrb1, 2700088M22Rik, Madp-1; zinc finger CCHC-type ... 43.5 2e-04
dre:192325 ncbp2, CHUNP6917, zgc:92592; nuclear cap binding pr... 43.1 2e-04
hsa:85437 ZCRB1, MADP-1, MADP1, MGC26805, RBM36, ZCCHC19; zinc... 43.1 2e-04
ath:AT4G19610 RNA binding / nucleic acid binding / nucleotide ... 43.1 3e-04
mmu:68092 Ncbp2, 20kDa, 5930413E18Rik, AA536802, AI843301, C79... 43.1 3e-04
hsa:1994 ELAVL1, ELAV1, HUR, Hua, MelG; ELAV (embryonic lethal... 42.7 3e-04
xla:446310 zcrb1, MGC82154; zinc finger CCHC-type and RNA bind... 42.7 3e-04
xla:447602 MGC84815 protein 42.7 3e-04
bbo:BBOV_IV008110 23.m05855; nuclear cap-binding protein; K128... 42.7 3e-04
ath:AT5G44200 CBP20; CBP20 (CAP-BINDING PROTEIN 20); RNA bindi... 42.7 4e-04
mmu:15568 Elavl1, 2410055N02Rik, HUR, Hua, W91709; ELAV (embry... 42.0 6e-04
ath:AT4G24270 RNA recognition motif (RRM)-containing protein 42.0 6e-04
mmu:50926 Hnrpdl, AA407431, AA959857, D5Ertd650e, D5Wsu145e, J... 41.6 7e-04
sce:YPL178W CBC2, CBP20, MUD13, SAE1; Cbc2p; K12883 nuclear ca... 41.6 7e-04
mmu:100042881 Gm10352; predicted gene 10352 41.2
mmu:100042874 Gm10256; predicted gene 10256 41.2
mmu:100042849 Gm4064; predicted gene 4064 41.2
mmu:19657 Rbmy1a1, RBM, Rbm1, Rbmy1b; RNA binding motif protei... 41.2 0.001
mmu:100041505 Gm3376; predicted gene 3376 41.2
dre:393467 MGC66127; zgc:66127; K12741 heterogeneous nuclear r... 41.2 0.001
mmu:68272 Rbm28, 2810480G15Rik, AI503051, MGC12075, MGC38664; ... 40.8 0.001
mmu:67543 Pabpc6, 4932702K14Rik, AI428050, MGC132900, Pabpc3; ... 40.8 0.001
cel:T01D1.2 etr-1; ELAV-Type RNA binding protein family member... 40.8 0.001
hsa:1993 ELAVL2, HEL-N1, HELN1, HUB; ELAV (embryonic lethal, a... 40.8 0.001
xla:379484 cirbp-b, MGC64461, Xcirp, cirbp, cirp, cirp2, xcirp... 40.8 0.001
mmu:15569 Elavl2, Hub, mel-N1; ELAV (embryonic lethal, abnorma... 40.8 0.001
hsa:1153 CIRBP, CIRP; cold inducible RNA binding protein; K131... 40.4 0.001
cel:C30B5.4 hypothetical protein; K13107 RNA-binding motif pro... 40.4 0.002
dre:550251 zcrb1, si:ch211-155a11.4, zgc:110711; zinc finger C... 40.4 0.002
mmu:15572 Elavl4, Elav, Hud, PNEM; ELAV (embryonic lethal, abn... 40.4 0.002
dre:30737 elavl4, elrd, wu:fc24h01, zHuD; ELAV (embryonic leth... 40.0 0.002
xla:386602 elavl4, HuD, elrD, elrD1, elrD2; ELAV (embryonic le... 40.0 0.002
hsa:1996 ELAVL4, HUD, PNEM; ELAV (embryonic lethal, abnormal v... 40.0 0.002
> tgo:TGME49_094670 eukaryotic translation initiation factor 3,
putative ; K03248 translation initiation factor 3 subunit
G
Length=277
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Query 17 FADLNPAKTSRDLRQKFLSLQNEDEP-VDGAEGDPLGGRLGVGGAKGLSRLRGSGDAAKD 75
DLNP+KTSRDLRQKF +L+ +DE G +GD G G K + R R G+ KD
Sbjct 126 MGDLNPSKTSRDLRQKFRALREDDEAGAAGGDGDEETGLRSAGAGKYIPRARREGETLKD 185
Query 76 LEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINR 135
+E RRREE TIRVTNLSED K+EDLTELFG IGKI+R++LAKHK+KK SKGFAFITY R
Sbjct 186 VENRRREECTIRVTNLSEDVKDEDLTELFGKIGKIDRIYLAKHKEKKCSKGFAFITYQRR 245
Query 136 E 136
E
Sbjct 246 E 246
> bbo:BBOV_IV004370 23.m06488; translation initiation factor 3
subunit; K03248 translation initiation factor 3 subunit G
Length=268
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 14/129 (10%)
Query 10 EDDEDIQFA--DLNPAKTSRDLRQKFLSLQNEDEPVDGAEGDPLGGRLGVGGAKGLSRLR 67
ED+ D+ +A D+N + +R+L+ KF SL+++ + VD + + AK + R
Sbjct 119 EDNLDLVYAPADINLTRATRELKMKFKSLRDDSDVVDMMDSKDMP-------AKYVPPSR 171
Query 68 GSGDAAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGF 127
G + R +E T+RVTNLSED +E+DL ELF +G+I R +LAKHK+ + SKGF
Sbjct 172 KEGG-----DRRNFDENTVRVTNLSEDVREKDLVELFSRVGRIHRAYLAKHKETQYSKGF 226
Query 128 AFITYINRE 136
AFITY R+
Sbjct 227 AFITYATRQ 235
> tpv:TP01_0314 eukaryotic translation initiation factor 3 subunit
4; K03248 translation initiation factor 3 subunit G
Length=266
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 15/129 (11%)
Query 10 EDDEDIQFA--DLNPAKTSRDLRQKFLSLQNEDEPVDGAEGDPLGGRLGVGGAKGLSRLR 67
+DD D+ ++ D N K SRDL+ KF SL+ ED + E + + +G R
Sbjct 121 DDDSDLIYSPVDANFLKLSRDLKLKFKSLKEEDNVPEEVEEEAPAKYVPPSRKEGGER-- 178
Query 68 GSGDAAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGF 127
R ++ TIR+TNLSED +E+DLTELFG +G+I R +LAK+K+ + KGF
Sbjct 179 -----------RSFDDNTIRITNLSEDIREKDLTELFGRVGRIHRAYLAKYKETQNPKGF 227
Query 128 AFITYINRE 136
AF+TY+N+E
Sbjct 228 AFVTYVNKE 236
> pfa:MAL8P1.83 eukaryotictranslation initiation factor, putative;
K03248 translation initiation factor 3 subunit G
Length=266
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 13/113 (11%)
Query 24 KTSRDLRQKFLSLQNEDEPVDGAEGDPLGGRLGVGGAKGLSRLRGSGDAAKDLEARRREE 83
KT++DL+ +F L++E E D DP +K R G D + + E
Sbjct 138 KTAKDLKNRFKILKDE-ETEDVKAEDP---------SKAAGRREGLYYRPHDTQNK---E 184
Query 84 ATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
T+RVTNLSED E +L+ LFG +G I R+FLAKHK+ + SKGFAFITY RE
Sbjct 185 CTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKRE 237
> xla:446311 eif3s4, MGC83369, eIF3g-A, eif3s4-A; eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa; K03248
translation initiation factor 3 subunit G
Length=308
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query 45 GAEGDPLGGRLGVGGAKGLSRLRGSGDA-AKDLEARRR--EEATIRVTNLSEDAKEEDLT 101
GAE +P + G LR G + ++ RR + ATIRVTNLSED +E DL
Sbjct 185 GAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQ 244
Query 102 ELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
ELF G I R++LAK K SKGFAFI++ RE
Sbjct 245 ELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 279
> xla:447749 eIF3g-B, eif3s4-B; MGC83338 protein; K03248 translation
initiation factor 3 subunit G
Length=308
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query 41 EPVDGAEGDPLGGRLGVGGAKGLSRLRGSGDA-AKDLEARRR--EEATIRVTNLSEDAKE 97
E GAE +P + G LR G + ++ RR + ATIRVTNLSED +E
Sbjct 181 EKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRE 240
Query 98 EDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
DL ELF G I R++LAK K SKGFAFI++ RE
Sbjct 241 TDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 279
> mmu:53356 Eif3g, 44kDa, D0Jmb4, Eif3s4, TU-189B2, eIF3-p44,
p44; eukaryotic translation initiation factor 3, subunit G;
K03248 translation initiation factor 3 subunit G
Length=320
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query 36 LQNEDEPVDGAEGDPLGGRLGVGGAKGLSRLRGSGDAAKDLEARRR--EEATIRVTNLSE 93
L E EPV A+ G + G SR RG + ++ RR + ATIRVTNLSE
Sbjct 196 LPGELEPVQAAQSK-TGKYVPPSLRDGASR-RG-----ESMQPNRRADDNATIRVTNLSE 248
Query 94 DAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
D +E DL ELF G I R++LAK K SKGFAFI++ RE
Sbjct 249 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 291
> hsa:8666 EIF3G, EIF3-P42, EIF3S4, eIF3-delta, eIF3-p44; eukaryotic
translation initiation factor 3, subunit G; K03248 translation
initiation factor 3 subunit G
Length=320
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query 68 GSGDAAKDLEARRR--EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASK 125
G+ + ++ RR + ATIRVTNLSED +E DL ELF G I R++LAK K SK
Sbjct 221 GASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSK 280
Query 126 GFAFITYINRE 136
GFAFI++ RE
Sbjct 281 GFAFISFHRRE 291
> dre:393974 eif3g, MGC56553, eif3s4, zgc:56553; eukaryotic translation
initiation factor 3, subunit G; K03248 translation
initiation factor 3 subunit G
Length=293
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query 76 LEARRR--EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYI 133
++ RR + ATIRVTNLSED +E DL ELF G I R++LAK K+ SKGFA I++
Sbjct 202 MQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFALISFH 261
Query 134 NRE 136
RE
Sbjct 262 RRE 264
> cpv:cgd4_1030 eukaryotic translation initiation factor ; K03248
translation initiation factor 3 subunit G
Length=352
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query 75 DLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLA-KHKDKKASKGFAFITYI 133
+L++ R++ T+RV NLSEDA EEDL ELF T G++ +VFLA + K +KGFAFITY
Sbjct 261 NLQSSHRDDCTVRVANLSEDATEEDLQELFKTAGRVVKVFLAKNKNNSKNTKGFAFITYS 320
Query 134 NRE 136
RE
Sbjct 321 KRE 323
> ath:AT3G11400 EIF3G1; eukaryotic translation initiation factor
3G / eIF3g; K03248 translation initiation factor 3 subunit
G
Length=321
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 0/58 (0%)
Query 79 RRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
RR +E ++RVTNLSED +E DL ELF G + RV++A + S+GF F+ +++RE
Sbjct 235 RRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSRE 292
> cel:F22B5.2 eif-3.G; Eukaryotic Initiation Factor family member
(eif-3.G); K03248 translation initiation factor 3 subunit
G
Length=256
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 0/63 (0%)
Query 74 KDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYI 133
+ ++ R +E T RVTNL ++ E++L +LFG IG++ R+F+A+ K KGFAF+T+
Sbjct 166 RQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFE 225
Query 134 NRE 136
+R+
Sbjct 226 SRD 228
> ath:AT5G06000 EIF3G2; EIF3G2; RNA binding / translation initiation
factor; K03248 translation initiation factor 3 subunit
G
Length=308
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 0/57 (0%)
Query 80 RREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
R +E ++RVTNLSED + DL ELF G + R +A + S+GF F+++++RE
Sbjct 202 RHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSRE 258
> cel:F26A3.2 ncbp-2; Nuclear Cap-Binding Protein family member
(ncbp-2); K12883 nuclear cap-binding protein subunit 2
Length=154
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 0/65 (0%)
Query 72 AAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFIT 131
+D E R T+ V NLS KE+ + ELFG G + RV + + KK GF F+
Sbjct 25 TVRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVE 84
Query 132 YINRE 136
Y RE
Sbjct 85 YYTRE 89
> ath:AT3G10400 RNA recognition motif (RRM)-containing protein;
K13154 U11/U12 small nuclear ribonucleoprotein 31 kDa protein
Length=261
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 0/54 (0%)
Query 83 EATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
++T+ V+NL D+ LF T GK+ RV + K + + S+G AF+ Y++RE
Sbjct 56 KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRE 109
> xla:100380998 ncbp2; nuclear cap binding protein subunit 2,
20kDa; K12883 nuclear cap-binding protein subunit 2
Length=153
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 0/61 (0%)
Query 75 DLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYIN 134
D E+ ++ T+ V NLS EE + ELF G ++R+ + K KK + GF F+ Y
Sbjct 28 DQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYT 87
Query 135 R 135
R
Sbjct 88 R 88
> ath:AT2G44710 RNA recognition motif (RRM)-containing protein
Length=809
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 0/60 (0%)
Query 77 EARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
E R+R+E I V +L + A EEDL ++FG +G++ V + K+ K SKG AF+ + E
Sbjct 207 ERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVE 266
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 0/52 (0%)
Query 85 TIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
TI + L EE + +L GK+E+V LA++ K F F+T+ E
Sbjct 392 TIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHE 443
> mmu:67197 Zcrb1, 2700088M22Rik, Madp-1; zinc finger CCHC-type
and RNA binding motif 1; K13154 U11/U12 small nuclear ribonucleoprotein
31 kDa protein
Length=217
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 0/55 (0%)
Query 82 EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
++T+ V+NL DL +F GK+ +V + K KD + SKG AFI +++++
Sbjct 8 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKD 62
> dre:192325 ncbp2, CHUNP6917, zgc:92592; nuclear cap binding
protein subunit 2; K12883 nuclear cap-binding protein subunit
2
Length=155
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 0/55 (0%)
Query 81 REEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINR 135
++ AT+ V NLS EE + LF G ++R+ + K KK + GF F+ Y R
Sbjct 36 KQSATLYVGNLSFYTTEEQVHVLFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTR 90
> hsa:85437 ZCRB1, MADP-1, MADP1, MGC26805, RBM36, ZCCHC19; zinc
finger CCHC-type and RNA binding motif 1; K13154 U11/U12
small nuclear ribonucleoprotein 31 kDa protein
Length=217
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 0/54 (0%)
Query 83 EATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
++T+ V+NL DL +F GK+ +V + K KD + SKG AFI +++++
Sbjct 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKD 62
> ath:AT4G19610 RNA binding / nucleic acid binding / nucleotide
binding; K14787 multiple RNA-binding domain-containing protein
1
Length=816
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 0/46 (0%)
Query 88 VTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYI 133
V NL A EE+L E F T GKI V L K+ K S+G A+I Y+
Sbjct 298 VRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYL 343
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query 86 IRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
+ V N++ +A + +L +LF G+I+ + L K K+ G+AF+ ++ ++
Sbjct 704 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQ 753
> mmu:68092 Ncbp2, 20kDa, 5930413E18Rik, AA536802, AI843301, C79367;
nuclear cap binding protein subunit 2; K12883 nuclear
cap-binding protein subunit 2
Length=156
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 0/55 (0%)
Query 81 REEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINR 135
++ T+ V NLS EE + ELF G I+++ + K KK + GF F+ Y +R
Sbjct 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR 91
> hsa:1994 ELAVL1, ELAV1, HUR, Hua, MelG; ELAV (embryonic lethal,
abnormal vision, Drosophila)-like 1 (Hu antigen R); K13088
ELAV-like protein 1
Length=326
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query 55 LGVGGAKGLSRLRGSGDAAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVF 114
+GV GLS + G+A+ I + NL +DA E L ++FG G + V
Sbjct 223 MGVDHMSGLSGVNVPGNASSGW--------CIFIYNLGQDADEGILWQMFGPFGAVTNVK 274
Query 115 LAKHKDKKASKGFAFITYINRE 136
+ + + KGF F+T N E
Sbjct 275 VIRDFNTNKCKGFGFVTMTNYE 296
> xla:446310 zcrb1, MGC82154; zinc finger CCHC-type and RNA binding
motif 1; K13154 U11/U12 small nuclear ribonucleoprotein
31 kDa protein
Length=218
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 0/54 (0%)
Query 83 EATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
++T+ V+NL DL +F GK+ +V + K KD + SKG +F+ ++++E
Sbjct 9 KSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKE 62
> xla:447602 MGC84815 protein
Length=291
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query 74 KDLEARR---REEAT---------IRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDK 121
KD++++R REE + I V L +D EDL E FG G + + KD
Sbjct 81 KDVDSKRAMPREETSPEVHAAVKKIFVGGLKKDVTNEDLAEYFGKFGNVTDASIVVAKDT 140
Query 122 KASKGFAFITY 132
S+GFAF+T+
Sbjct 141 NTSRGFAFVTF 151
> bbo:BBOV_IV008110 23.m05855; nuclear cap-binding protein; K12883
nuclear cap-binding protein subunit 2
Length=172
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 0/61 (0%)
Query 72 AAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFIT 131
+ ++ R + +T+ V NLS EE + E+F G+I R+ L + +K GFAF+
Sbjct 22 SPEEWNYRIQRSSTVYVGNLSFATPEERIHEIFSQAGRIHRIVLGLNSIEKKPCGFAFVI 81
Query 132 Y 132
Y
Sbjct 82 Y 82
> ath:AT5G44200 CBP20; CBP20 (CAP-BINDING PROTEIN 20); RNA binding
/ RNA cap binding; K12883 nuclear cap-binding protein subunit
2
Length=257
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 0/56 (0%)
Query 81 REEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
R T+ + N+S EE L ELF G+I+++ + K+ K GF F+ + +RE
Sbjct 31 RASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSRE 86
> mmu:15568 Elavl1, 2410055N02Rik, HUR, Hua, W91709; ELAV (embryonic
lethal, abnormal vision, Drosophila)-like 1 (Hu antigen
R); K13088 ELAV-like protein 1
Length=326
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query 55 LGVGGAKGLSRLRGSGDAAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVF 114
+GV G+S + G+A+ I + NL +DA E L ++FG G + V
Sbjct 223 MGVDHMSGISGVNVPGNASSGW--------CIFIYNLGQDADEGILWQMFGPFGAVTNVK 274
Query 115 LAKHKDKKASKGFAFITYINRE 136
+ + + KGF F+T N E
Sbjct 275 VIRDFNTNKCKGFGFVTMTNYE 296
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 0/46 (0%)
Query 88 VTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYI 133
V L ++ +E+L LF +IG++E L + K S G+ F+ Y+
Sbjct 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV 69
> ath:AT4G24270 RNA recognition motif (RRM)-containing protein
Length=817
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query 73 AKDLEAR-RREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFIT 131
AK L+ + R+E T ++NLS A+EED+ + FG G ++ + + HKD +G A+
Sbjct 639 AKPLKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYAD 698
Query 132 YINRE 136
+++ E
Sbjct 699 FVDDE 703
> mmu:50926 Hnrpdl, AA407431, AA959857, D5Ertd650e, D5Wsu145e,
JKTBP, hnRNP_DL, hnRNP-DL; heterogeneous nuclear ribonucleoprotein
D-like; K13044 heterogeneous nuclear ribonucleoprotein
A/B/D
Length=420
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 0/51 (0%)
Query 86 IRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
+ V LS D EE + E FG G+IE + L +GF FITY + E
Sbjct 235 VFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 285
> sce:YPL178W CBC2, CBP20, MUD13, SAE1; Cbc2p; K12883 nuclear
cap-binding protein subunit 2
Length=208
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 0/49 (0%)
Query 84 ATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITY 132
+TI V NLS EE + ELF G I+R+ + + K GF FI Y
Sbjct 46 STIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIY 94
> mmu:100042881 Gm10352; predicted gene 10352
Length=380
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 0/51 (0%)
Query 82 EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITY 132
+ I + L+ +++ L E+FG G + RV L + ++ K S+GFAF+T+
Sbjct 6 QPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTF 56
> mmu:100042874 Gm10256; predicted gene 10256
Length=380
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 0/51 (0%)
Query 82 EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITY 132
+ I + L+ +++ L E+FG G + RV L + ++ K S+GFAF+T+
Sbjct 6 QPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTF 56
> mmu:100042849 Gm4064; predicted gene 4064
Length=380
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 0/51 (0%)
Query 82 EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITY 132
+ I + L+ +++ L E+FG G + RV L + ++ K S+GFAF+T+
Sbjct 6 QPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTF 56
> mmu:19657 Rbmy1a1, RBM, Rbm1, Rbmy1b; RNA binding motif protein,
Y chromosome, family 1, member A1
Length=380
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 0/51 (0%)
Query 82 EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITY 132
+ I + L+ +++ L E+FG G + RV L + ++ K S+GFAF+T+
Sbjct 6 QPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTF 56
> mmu:100041505 Gm3376; predicted gene 3376
Length=380
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 0/51 (0%)
Query 82 EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITY 132
+ I + L+ +++ L E+FG G + RV L + ++ K S+GFAF+T+
Sbjct 6 QPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTF 56
> dre:393467 MGC66127; zgc:66127; K12741 heterogeneous nuclear
ribonucleoprotein A1/A3
Length=388
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 0/45 (0%)
Query 88 VTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITY 132
V + ED EE L E FG GKI+ V + K+ +GFAFIT+
Sbjct 110 VGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITF 154
> mmu:68272 Rbm28, 2810480G15Rik, AI503051, MGC12075, MGC38664;
RNA binding motif protein 28; K14573 nucleolar protein 4
Length=750
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 0/48 (0%)
Query 85 TIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITY 132
T+ V L A+ + L ELF +G +++ F+ K KA +GF ++T+
Sbjct 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTF 52
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 0/52 (0%)
Query 85 TIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
T+ + NLS D++EE L E+ G ++ V + H D + SKG AF ++ +E
Sbjct 326 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 377
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query 88 VTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYIN 134
+ NLS E+DL +F G + V + K D K +GFAF+ + N
Sbjct 118 IRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKM-RGFAFVQFKN 163
> mmu:67543 Pabpc6, 4932702K14Rik, AI428050, MGC132900, Pabpc3;
poly(A) binding protein, cytoplasmic 6; K13126 polyadenylate-binding
protein
Length=643
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query 63 LSRLRGSGDAAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKK 122
+ R + D +L AR +E + + NL ED +E L +LFG G V + + K
Sbjct 170 VGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGK 229
Query 123 ASKGFAFITYINRE 136
SKGF F+++ E
Sbjct 230 -SKGFGFVSFERHE 242
> cel:T01D1.2 etr-1; ELAV-Type RNA binding protein family member
(etr-1); K13207 CUG-BP- and ETR3-like factor
Length=584
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query 74 KDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYI 133
K + R E + + LS+ EE+L E+F G IE + + +D K S+G AF+T+
Sbjct 132 KPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGK-SRGCAFVTFT 190
Query 134 NR 135
NR
Sbjct 191 NR 192
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query 53 GRLGVGGAKGLSRLRGSGDAAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIER 112
G +GV +++ G+GD + + A + + +L +D + DL F G I
Sbjct 474 GGVGVQATTSAAQMVGNGDV------KGPDGANLFIYHLPQDFGDSDLINTFAPFGGILS 527
Query 113 VFLAKHKDKKASKGFAFITYINRE 136
+ K SK F F++Y N +
Sbjct 528 AKVFIDKVTNLSKCFGFVSYENAQ 551
> hsa:1993 ELAVL2, HEL-N1, HELN1, HUB; ELAV (embryonic lethal,
abnormal vision, Drosophila)-like 2 (Hu antigen B); K13208
ELAV like protein 2/3/4
Length=346
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 0/74 (0%)
Query 60 AKGLSRLRGSGDAAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHK 119
A G + + + + D + + V L ++ +E+L LFG+IG+IE L + K
Sbjct 15 ANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74
Query 120 DKKASKGFAFITYI 133
S G+ F+ YI
Sbjct 75 ITGQSLGYGFVNYI 88
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 0/52 (0%)
Query 85 TIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
I V NL+ DA E L ++FG G + V + + + KGF F+T N +
Sbjct 264 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 315
> xla:379484 cirbp-b, MGC64461, Xcirp, cirbp, cirp, cirp2, xcirp2;
cold inducible RNA binding protein; K13195 cold-inducible
RNA-binding protein
Length=166
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 0/53 (0%)
Query 82 EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYIN 134
+E + + L+ D EE L ++F G+I V + K ++ K S+GF F+T+ N
Sbjct 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFEN 55
> mmu:15569 Elavl2, Hub, mel-N1; ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B); K13208 ELAV like
protein 2/3/4
Length=359
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 0/74 (0%)
Query 60 AKGLSRLRGSGDAAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHK 119
A G + + + + D + + V L ++ +E+L LFG+IG+IE L + K
Sbjct 15 ANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74
Query 120 DKKASKGFAFITYI 133
S G+ F+ YI
Sbjct 75 ITGQSLGYGFVNYI 88
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 0/52 (0%)
Query 85 TIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
I V NL+ DA E L ++FG G + V + + + KGF F+T N +
Sbjct 277 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328
> hsa:1153 CIRBP, CIRP; cold inducible RNA binding protein; K13195
cold-inducible RNA-binding protein
Length=172
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 0/53 (0%)
Query 82 EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYIN 134
+E + V LS D E+ L ++F G+I V + K ++ + S+GF F+T+ N
Sbjct 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 56
> cel:C30B5.4 hypothetical protein; K13107 RNA-binding motif protein,
X-linked 2
Length=302
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 0/64 (0%)
Query 69 SGDAAKDLEARRREEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFA 128
+GD K ++ A I + LS E D+ +F G++ + L + KD SKGFA
Sbjct 23 AGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFA 82
Query 129 FITY 132
F+ Y
Sbjct 83 FLCY 86
> dre:550251 zcrb1, si:ch211-155a11.4, zgc:110711; zinc finger
CCHC-type and RNA binding motif 1; K13154 U11/U12 small nuclear
ribonucleoprotein 31 kDa protein
Length=145
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 0/55 (0%)
Query 82 EEATIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYINRE 136
++T+ V+N+ D+ +L GK+ +V + K K + SKG AF+ +++RE
Sbjct 8 SKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRE 62
> mmu:15572 Elavl4, Elav, Hud, PNEM; ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D); K13208 ELAV
like protein 2/3/4
Length=380
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 0/50 (0%)
Query 85 TIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYIN 134
I V NLS D+ E L +LFG G + V + + + KGF F+T N
Sbjct 298 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 347
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 0/46 (0%)
Query 88 VTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYI 133
V L ++ +E+ LFG+IG+IE L + K S G+ F+ YI
Sbjct 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
> dre:30737 elavl4, elrd, wu:fc24h01, zHuD; ELAV (embryonic lethal,
abnormal vision, Drosophila)-like 4 (Hu antigen D); K13208
ELAV like protein 2/3/4
Length=367
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 0/50 (0%)
Query 85 TIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYIN 134
I V NLS D+ E L +LFG G + V + + + KGF F+T N
Sbjct 285 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 334
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 0/46 (0%)
Query 88 VTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYI 133
V L ++ +E+ LFG+IG+IE L + K S G+ F+ YI
Sbjct 48 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 93
> xla:386602 elavl4, HuD, elrD, elrD1, elrD2; ELAV (embryonic
lethal, abnormal vision)-like 4 (Hu antigen D); K13208 ELAV
like protein 2/3/4
Length=400
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 0/50 (0%)
Query 85 TIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYIN 134
I V NLS D+ E L +LFG G + V + + + KGF F+T N
Sbjct 318 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 367
> hsa:1996 ELAVL4, HUD, PNEM; ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D); K13208 ELAV like
protein 2/3/4
Length=366
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 0/50 (0%)
Query 85 TIRVTNLSEDAKEEDLTELFGTIGKIERVFLAKHKDKKASKGFAFITYIN 134
I V NLS D+ E L +LFG G + V + + + KGF F+T N
Sbjct 284 CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 333
Lambda K H
0.313 0.135 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2428006156
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40