bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0191_orf3 Length=365 Score E Sequences producing significant alignments: (Bits) Value 10116.ENSRNOP00000055996 379 1e-103 > 10116.ENSRNOP00000055996 Length=349 Score = 379 bits (972), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 181/338 (53%), Positives = 245/338 (72%), Gaps = 8/338 (2%) Query 23 SGSSSSSSGSS------SSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMP 76 SGS S+ SG+ S ++ E W+EKYRP L+E+VGN++ + RL + A EGN+P Sbjct 6 SGSGSAESGTQEPSPVPSKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVP 65 Query 77 HLLLAGPPGTGKTSSVLCLARALLQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRDL 136 ++++AGPPGTGKT+S+LCLARALL + LELNAS++R IDVVR++IK FA+++ L Sbjct 66 NIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL 125 Query 137 PLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRF 196 P GRHKIIILDE DSMT+ AQQALRR ME++S TTRFALACN+S +IEP+QSRCA+LR+ Sbjct 126 PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRY 185 Query 197 TKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKEN 256 TKL+DA ++ RL V KE V +TDDG+EAI+F+A GDMR ALNNLQST SGFG +N EN Sbjct 186 TKLTDAQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSEN 245 Query 257 VEKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVLRRADSEL 316 V KVCD P P +++ ++Q CV + A + + LGY+P DV+ V + + Sbjct 246 VFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTF--PM 303 Query 317 QEHLLLEFLGIVGMTHMTMAGGLSTELQMEKMLAQLCK 354 E+L LEF+ +G THM +A G+++ LQM +LA+LC+ Sbjct 304 AEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLCQ 341 Lambda K H 0.316 0.129 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 140446200012 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40