bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0313_orf2 Length=222 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd7_220 389 3e-107 > 5807.cgd7_220 Length=212 Score = 389 bits (1000), Expect = 3e-107, Method: Compositional matrix adjust. Identities = 180/212 (84%), Positives = 196/212 (92%), Gaps = 0/212 (0%) Query 11 MTEQVPEFKLILVGDGGVGKTTLVKRHLTGEFEKKYIPTLGVEVRPLRFSTNFGPIVFNV 70 M Q PEFKL LVGDGGVGKTTLVKRHLTGEFEKKYIPT+GVEV PL+F+T+FGP++FNV Sbjct 1 MAAQAPEFKLALVGDGGVGKTTLVKRHLTGEFEKKYIPTIGVEVHPLKFNTDFGPLIFNV 60 Query 71 WDTAGQEKFGGLRDGYYIKGQCAIMMFDVTSRITYRNIPNWHRDIVRVCENIPIVLVGNK 130 WDTAGQEKFGGLRDGYYIKGQCAI+MFDVTSRITY+N+PNWHRDIVRVCENIPIVLVGNK Sbjct 61 WDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNK 120 Query 131 VDVKDRQVKARVIQFHRKKNLQYYDISARSNYNFEKPFLWLARRLTNQASLTFTGEHAKA 190 VDVKDRQVKAR IQ+HRK+NLQYYDISARSNYNFEKPFLWLARRLTNQ +L G+HAKA Sbjct 121 VDVKDRQVKARQIQYHRKRNLQYYDISARSNYNFEKPFLWLARRLTNQPALQLVGQHAKA 180 Query 191 PEIMIDPSLVQQAERELQEAVNTAIEDDDDDL 222 PE+ IDP+LV QAEREL EA N IEDDD+DL Sbjct 181 PEVNIDPTLVAQAERELSEAANAPIEDDDEDL 212 Lambda K H 0.321 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 60391056627 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40