bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eten_0550_orf1
Length=172
Score E
Sequences producing significant alignments: (Bits) Value
5807.cgd4_300 72.8 4e-12
> 5807.cgd4_300
Length=342
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query 10 PWVRSVRHAALVYPSLCRGCPTRSHLL---FGDKNTLRNDIWFAFAH-TQTLGPVWDWRQ 65
WV V+ L+YP+LC+ C T S L FG N L + +WF + ++ + +DWR
Sbjct 218 KWVDHVKFLGLIYPALCQKCITNSKLKNFRFGFLN-LNSLLWFEKQYQSKYIENYFDWRS 276
Query 66 IPFAIPAKILSQFPPTSLILFTHDIQYETGVLFHEKLRRAGVPTSLFIAPG 116
P PA IL +FP TS++L DI Y+ G L +E L + V L I G
Sbjct 277 QPLLAPANILRKFPKTSIVLMKSDILYDEGRLMYEILLKLKVNVKLKIFTG 327
Lambda K H
0.325 0.137 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 32857020181
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40