bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_0630_orf1 Length=138 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd5_3760 80.5 1e-14 > 5807.cgd5_3760 Length=146 Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/74 (48%), Positives = 54/74 (72%), Gaps = 0/74 (0%) Query 19 FDKTVQDIRNMVYPYLGRFQRRQFLNTALRALGFAATKTQKMPLPELLARKKATAAVIEA 78 F++TV++IR +VYP+L +FQR+Q+ N + LG K+QKMPLPEL++R+KAT I+ Sbjct 19 FNETVREIRKLVYPHLDKFQRQQYDNARAKVLGIKQKKSQKMPLPELISRQKATKRHIDK 78 Query 79 RQAEEKALGVRSHI 92 R+ E+ L V+ HI Sbjct 79 RKQLEEELDVKLHI 92 Lambda K H 0.316 0.128 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22344559178 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40