bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1020_orf1 Length=101 Score E Sequences producing significant alignments: (Bits) Value 5833.PFE1155c 104 8e-22 > 5833.PFE1155c Length=536 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 0/90 (0%) Query 1 MLHQTAWHNNTLGLKLFATEKSLQHYDANTIRQFILDHFSPENMVCVGVNVNHEEFSRWV 60 +LH TAW+NNTLG KL+ E S+++Y + +R F+L HFSP+NM +GVNV H+E ++W Sbjct 245 LLHNTAWYNNTLGNKLYVYESSIENYTSENLRNFMLKHFSPKNMTLIGVNVEHDELTKWT 304 Query 61 MRAFVDYNAVPNKPRKYIQPIYTGGDSRVE 90 RAF DY +P +K + P YTGG VE Sbjct 305 SRAFQDYVPIPYTNQKEVTPKYTGGFISVE 334 Lambda K H 0.322 0.134 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22990353331 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40