bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1085_orf1 Length=134 Score E Sequences producing significant alignments: (Bits) Value 5671.LinJ15.1020 137 1e-31 > 5671.LinJ15.1020 Length=400 Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 63/93 (67%), Positives = 75/93 (80%), Gaps = 0/93 (0%) Query 42 PKVLSMSAEVRADNPYSRLMALQRMGVVRDYQAITKKAVLLVGVGGVGSVAAEMLVRCGI 101 P SAEVR DNPYSRLMALQRMGVV DY++I KAV ++G GGVGSV AEML RCGI Sbjct 7 PAPKRFSAEVRDDNPYSRLMALQRMGVVDDYESIRDKAVAIIGAGGVGSVVAEMLTRCGI 66 Query 102 GKIILLDFDSVELSNMNRLFFTPKDVGMTKVEA 134 GK++L D+D+VE++NMNRLF+ P+ GM KVEA Sbjct 67 GKLLLFDYDTVEMANMNRLFYRPEQQGMKKVEA 99 Lambda K H 0.321 0.137 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22682284714 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40