bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1127_orf2 Length=250 Score E Sequences producing significant alignments: (Bits) Value 3702.AT5G61500.1 186 5e-46 > 3702.AT5G61500.1 Length=313 Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 109/263 (41%), Positives = 150/263 (57%), Gaps = 20/263 (7%) Query 1 DLLVFKFPTWQWEPAVGKRINSWLPPDKQFLVTRGVACHRRVRDIEASLAAEA------R 54 D LV K PTW WE + +LP DKQFL+TR V C RR + A Sbjct 43 DNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDD 102 Query 55 EDAEGWVL----PVEAEEPEEVLSV--SVSGGETNPLEKPPGGSGSSLRDTSGGALPDLK 108 ED +GW+ P + + E+ L ++ E N ++ P G D +PD++ Sbjct 103 EDNDGWLATHGKPKDKGKEEDNLPSMDALDINEKNTIQSIPTYFGGEEDDD----IPDME 158 Query 109 NLRDLDSLLCEDDPACADSSTSYFVRNAPDAD-VLSVRTYDLSITYDKYFQTPRLWLFGY 167 + D+++ E+DPA S+ Y V + PD D +L RTYDLSITYDKY+QTPR+WL GY Sbjct 159 EFDEADNVV-ENDPATLQST--YLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGY 215 Query 168 NESGTPLTPVEIFEDILTDYAAKTVTVDPHPCTGVPTASIHPCKHAQVMKKVVDHWRSQG 227 +ES L P + ED+ D+A KTVT++ HP AS+HPC+H VMKK++D S+G Sbjct 216 DESRMLLQPELVMEDVSQDHARKTVTIEDHPHLPGKHASVHPCRHGAVMKKIIDVLMSRG 275 Query 228 VEPRPDLALIVLLKFISSVVPTI 250 VEP D L + LKF++SV+PTI Sbjct 276 VEPEVDKYLFLFLKFMASVIPTI 298 Lambda K H 0.317 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 75630515125 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40