bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1130_orf2 Length=113 Score E Sequences producing significant alignments: (Bits) Value 6239.F56H11.1c 76.6 2e-13 > 6239.F56H11.1c Length=728 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 4/81 (4%) Query 27 ICDGS--CTNLKGSYKCGCLPGFELAEDGS-CVDVDECALGLHACEHSCENIVGSYRCVC 83 +CD S C N GS++C C PGF+LA DG C DV+EC G+ ACE C NI GSY+C+C Sbjct 441 VCDLSAECINTIGSFECKCKPGFQLASDGRRCEDVNECTTGIAACEQKCVNIPGSYQCIC 500 Query 84 SVGWAADPQQPSRCVDVNECS 104 G+A P ++C D++ECS Sbjct 501 DRGFALGPDG-TKCEDIDECS 520 Lambda K H 0.319 0.131 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22857864480 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40