bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1223_orf2 Length=160 Score E Sequences producing significant alignments: (Bits) Value 3702.AT1G49980.1 65.9 4e-10 > 3702.AT1G49980.1 Length=671 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 60/102 (58%), Gaps = 5/102 (4%) Query 59 IFANSKAGMDMTEEEKAKIAAKIFELSKNSPFYANEMRKNKQMEQQLSVLRRRVQLFASS 118 +F N+KAGM+ ++EK + ++E+SK S ++ NE RK M+Q++ +R R +S Sbjct 22 VFTNAKAGMEGVDKEK--VQRVVYEMSKGSKYFQNEERKEALMKQKIEHMRDRCAKLSSL 79 Query 119 GGSAAASATARRVLQQLQQQQQRESGRVYVHLDMDMFFCAVE 160 S +R+ L+ + R+ R+++H+DMD F+ AVE Sbjct 80 DLSNYQKVVDKRI---LELEATRDLSRIWLHVDMDAFYAAVE 118 Lambda K H 0.314 0.122 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 26871144147 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40