bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1244_orf1 Length=175 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1315w 95.1 8e-19 > 5833.PFF1315w Length=1712 Score = 95.1 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 45/107 (42%), Positives = 71/107 (66%), Gaps = 0/107 (0%) Query 12 LTKVVQKEFTELCASAPYRGSFLLTLQAKRGSELLVNAPFVVDTSEDGGVNVLTLPVSIA 71 L+K +Q+E EL S Y+ + L+ L +GSELL N P ++T ++ G+++ TLP+S+A Sbjct 1052 LSKKIQEELYELSKSEKYKNNNLVYLVRDKGSELLSNTPLTIETDDNAGIDMWTLPISLA 1111 Query 72 IQTQDQETLKVLIKRGAQIDVCDYLGKSPLLRACEASRLDLVEALLD 118 I +++ +++K GA+ID+ DYLGKSPL ACE + VE LL+ Sbjct 1112 ISKKNRYLFYLVLKGGAKIDIWDYLGKSPLYIACEHECKEFVEVLLE 1158 Lambda K H 0.321 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 34716851512 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40