bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1442_orf1 Length=160 Score E Sequences producing significant alignments: (Bits) Value 411154.GFO_3245 72.8 3e-12 > 411154.GFO_3245 Length=343 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 23/113 (20%) Query 18 PKVVLLDMRNASEYAVGHFKGSQCVDTLTFADSFTSGGPLEEALARVGIQLPSREATSVS 77 P VL+DMRN E +GHF+G+ D TF DS +EE L Sbjct 146 PNTVLVDMRNHYESEIGHFQGAITPDVDTFRDSL---DIIEEDLKE-------------- 188 Query 78 SKGSCSRKDVEIMMYCTGGIRCVKAGAFVKQILGFPRVTRLKGGILAYKNFIE 130 ++D ++MYCTGGIRC KA A+ K GF V +L+GGI+ Y +E Sbjct 189 -----HKEDKNLVMYCTGGIRCEKASAYYKH-RGFKNVYQLEGGIIEYTRQVE 235 Lambda K H 0.318 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 26871144147 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40