bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1475_orf2 Length=347 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd2_4350 222 2e-56 > 5807.cgd2_4350 Length=1281 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/243 (47%), Positives = 154/243 (63%), Gaps = 39/243 (16%) Query 10 MARSEQRAFWMQQLRQDCDAMASPDVLLDSMLKETEMQELSNDPEELHEQLKLQRDLEKL 69 M S+Q+A WM +R+ C ND EE E++ Sbjct 1000 MPTSQQKADWMTSIRRLC-----------------------ND-EERREKI--------- 1026 Query 70 RNAPVAPLNIASYTYMMVFYESDLGILSSVLINMLSAGVAMLLVAFILIPELSAGLLVIS 129 P + +Y YMM+FYESDL IL+ NMLS G+A+ L+ +LIPEL +GL VI Sbjct 1027 ------PFKVVAYNYMMLFYESDLSILTECFSNMLSCGIAIELITLMLIPELMSGLFVII 1080 Query 130 MICLIDLALFGFMYFWHVKLHMVSTIALVISIGFAVDYSAHMCHCFTHCLGKTRDERAIE 189 ++ ID+ LFGFMY+W+VKL+MVS I L++S+GFAVDYS M H F+HC GKTR+ R IE Sbjct 1081 LMACIDIGLFGFMYYWNVKLNMVSMINLLLSMGFAVDYSTLMTHTFSHCYGKTRNHRMIE 1140 Query 190 ALVLMGNPLFHGASSTLLGILLLGFSESFVFTVFFRMMVMVVLFGAAHGMILLPVILSWL 249 +L LMG P+ HGA ST LGI++L S S++FTVFF+MM+MVV FG HG ++LP++LS + Sbjct 1141 SLGLMGAPVCHGAMSTFLGIVVLSGSSSYIFTVFFKMMIMVVGFGIFHGAVVLPILLSLV 1200 Query 250 GPM 252 G M Sbjct 1201 GRM 1203 Lambda K H 0.322 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129734201706 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40