bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1547_orf1 Length=249 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0114 306 4e-82 > 5833.PF11_0114 Length=392 Score = 306 bits (784), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 139/249 (55%), Positives = 184/249 (73%), Gaps = 1/249 (0%) Query 1 PKCSSAHRQKLAEIFLEEFQTPEISLAVTGLVAIYGTGKTTGLVVDIGEGVTQCVPVFDG 60 P CS +HR+K+ EIF E F T ++L+V+GL+++Y +G TTGLV+DIGEGVTQC+PVFDG Sbjct 100 PLCSISHRKKMGEIFFEYFDTLNLNLSVSGLMSLYASGLTTGLVLDIGEGVTQCLPVFDG 159 Query 61 YLEAASLKRSDFGGEELQMYLQKILCDMGYQMTTRDDYEHVRVIKETLCFCSLDPASDQQ 120 Y+E S+ RSDFGGEEL M+LQK++CD+GY MTT E+V+ IKET+CFCSL+P+ DQ Sbjct 160 YIEKNSIIRSDFGGEELSMFLQKLICDIGYSMTTTKSLEYVKNIKETICFCSLNPSEDQL 219 Query 121 RTDLERIYRLPDGLTLRDGETTEIVLGPERFYPAEALFNPQLCGRDNPSLTDLLWSSVKA 180 R DL Y LPDG LRDG + I + ERFY AEALFNPQLC RDN S+ D++W S+ + Sbjct 220 RNDLAATYTLPDGDVLRDGYDS-IEIAHERFYVAEALFNPQLCHRDNLSIIDIIWKSILS 278 Query 181 CPIESRKSLVANVILCGGSTMFPGFPERLELELQNTSPPQARGFVKVDAPPQRQFLVWLG 240 CP+E+RK L ++++L GGS++FP ER+E E++N +P AR VKV A R + W G Sbjct 279 CPMENRKILSSSIVLSGGSSLFPNLVERIETEVRNNAPESARSMVKVHALENRAIMAWCG 338 Query 241 AKCFCDAAL 249 A+ F A L Sbjct 339 AQIFSQAEL 347 Lambda K H 0.321 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 75025471004 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40