bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1602_orf1 Length=136 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1350c 206 2e-52 > 5833.PFF1350c Length=997 Score = 206 bits (523), Expect = 2e-52, Method: Composition-based stats. Identities = 84/136 (61%), Positives = 107/136 (78%), Gaps = 0/136 (0%) Query 1 VCHTTAGYLLYSAPTHEYIFDYHPGDTFGCLADCGWITGHSYTVYGPLCNGATTILFQGI 60 V HTTAGYLLY+ T +YIFD D FGC+AD GW+TGH+Y +YGPL NG TT++F I Sbjct 566 VAHTTAGYLLYAYTTCKYIFDVKENDIFGCVADIGWVTGHTYVLYGPLLNGITTVIFSSI 625 Query 61 PTYPHPGRYWEIVDKWKVTQLYTSPTAIRALMQHGEEWPKKYDLSTLRVIGSVGEPINPE 120 PTYP GRYW ++ KVTQ YT+PTA+RALM++G+EW +KYDLS+ R++GSVGEPINPE Sbjct 626 PTYPDCGRYWSLIQTHKVTQFYTAPTALRALMKYGDEWIQKYDLSSCRILGSVGEPINPE 685 Query 121 AWRWYFTNVGRGHCSV 136 WRWY+ VG+ C++ Sbjct 686 TWRWYYNVVGKKKCTI 701 Lambda K H 0.322 0.141 0.500 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22513421946 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40