bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1614_orf1 Length=156 Score E Sequences producing significant alignments: (Bits) Value 5833.PFD0430c 81.3 9e-15 > 5833.PFD0430c Length=842 Score = 81.3 bits (199), Expect = 9e-15, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 3/157 (1%) Query 1 NVKSALKATFGVVSGGVSSNVSKEAEQREQLKHFQYETETLIVGGRVPKDVSDPDSMAEW 60 +VK+ ++A FG S G S++V+ + + + +++GG KDV+ +++ EW Sbjct 468 SVKAKIQAQFGFGSAGGSTDVNSSNSSANDEQSYDMNEQLIVIGGNPIKDVTKEENLFEW 527 Query 61 SDTVEELPMPVKITIQSLS-YLLPEEKKEAFEKASRFYAEAVGMSRADLNAMGGKVESIG 119 S TV PMP+ I + +S ++ KE+++KA +Y+ G+S D M + I Sbjct 528 SKTVTNHPMPINIKLTPISDSFDSDDLKESYDKAIIYYSRLYGLSPHD--TMQKDDKDII 585 Query 120 EVLRKATQVTYAGDPPGYAFCAPHERVLLGFALQLNF 156 ++L A VT PP A C + V+ GF+L+ NF Sbjct 586 KILTNADTVTKNSAPPINAQCPHGKVVMFGFSLKQNF 622 Lambda K H 0.313 0.130 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 24371502831 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40