bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1645_orf3 Length=137 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_1380 230 7e-60 > 5807.cgd6_1380 Length=440 Score = 230 bits (587), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 104/137 (75%), Positives = 120/137 (87%), Gaps = 0/137 (0%) Query 1 HHGKKHEASGFCYVNDCVLAALEFLRFKHRVLYVDVDIHHGDGVEEAFYTSPRVLCCSFH 60 HHGKKHEASGFCYVNDCVL ALEFL+++HRV YVD+DIHHGDGVEEAFYTSPR +C SFH Sbjct 144 HHGKKHEASGFCYVNDCVLGALEFLKYQHRVCYVDIDIHHGDGVEEAFYTSPRCMCVSFH 203 Query 61 KYGHFFPGTGALEDIGLEEGLGYSVNVPLHEGIDDQMYSSLFQRVMDQIMEVYRPEAVVF 120 KYG +FPGTGAL D+G+EEGLGYSVNVPL +G+DD + LF +VM +ME YRP A+V Sbjct 204 KYGDYFPGTGALNDVGVEEGLGYSVNVPLKDGVDDATFIDLFTKVMTLVMENYRPGAIVL 263 Query 121 QCGADSVAGDRLGCFNL 137 QCGADS++GDRLGCFNL Sbjct 264 QCGADSLSGDRLGCFNL 280 Lambda K H 0.326 0.144 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22428990562 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40