bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1664_orf2 Length=273 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd4_3100 68.9 2e-10 > 5807.cgd4_3100 Length=1631 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 52/72 (72%), Gaps = 1/72 (1%) Query 3 DNVPEQQQLVQMAKANNAYIELRKLTQDETASFLAHCLHINRKYLSFELVHYVHRVSSGI 62 D++ EQ++++Q AK NA+IE+ KLT +ET+ F+ H L +N + + F+LV YVHR S GI Sbjct 1063 DSIEEQKEIIQWAKECNAFIEVPKLTLNETSKFIGHQLGVNTQ-VPFQLVEYVHRASGGI 1121 Query 63 PKYIFLTAKQLV 74 P++I T QL+ Sbjct 1122 PEHIKRTLLQLL 1133 Lambda K H 0.316 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 88576444215 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40