bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1717_orf1 Length=145 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd2_3700 216 2e-55 > 5807.cgd2_3700 Length=1552 Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 96/145 (66%), Positives = 117/145 (80%), Gaps = 0/145 (0%) Query 1 LSLYNNNLHGILADEMGLGKTIQTIALLAYLKEFKNNGGPHLIIVPLSTLSNWADEFERW 60 LSLYNN LHGILADEMGLGKT+QTIALL YL E K+N GPHL++VPLSTL NW EFE W Sbjct 590 LSLYNNKLHGILADEMGLGKTVQTIALLTYLYEHKDNQGPHLVVVPLSTLPNWQKEFEIW 649 Query 61 APSLKVMLFKGARLERRQLQRQLKQIDFNVCLTTFDLAIRERSALATPSWRHLVVDEGHR 120 +P LK++ FKG+R ERR L +++Q FNVCLTTFD IRE AL + W+H++VDEGHR Sbjct 650 SPELKILCFKGSRYERRSLIYEMRQTKFNVCLTTFDFIIRESGALQSMQWKHIIVDEGHR 709 Query 121 MKNSKSKFHLSVSSFSASHRLLLTG 145 +KNSKSKFH+ ++ F + +RLLLTG Sbjct 710 LKNSKSKFHVVLADFKSENRLLLTG 734 Lambda K H 0.322 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22480264135 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40