bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1813_orf3 Length=194 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_2180 158 8e-38 > 5807.cgd6_2180 Length=896 Score = 158 bits (400), Expect = 8e-38, Method: Composition-based stats. Identities = 78/135 (57%), Positives = 102/135 (75%), Gaps = 3/135 (2%) Query 63 EMRVKGDYQSHSFVEAAMGVKIVAPGLEDAVAGTSLFVAEKE---EDIAELESEVMQEVS 119 EMRVKG+Y H F++A+MGVKI A GL+DAVAGT L V K E+I L+ EVM+++ Sbjct 584 EMRVKGEYIHHRFIKASMGVKICANGLDDAVAGTQLLVQSKNSTPEEIESLKEEVMKDMG 643 Query 120 LVLKKVEKTTNGVYVMASTLGALEALLAYLEDCKIPVFAVNIGTVQKKDIKKASVMREKG 179 + V++T NGVYVMASTLG+LEALL +L+ IPV A+NIGTV K D+++AS+M E+G Sbjct 644 DIFSSVDRTGNGVYVMASTLGSLEALLVFLKSSNIPVVALNIGTVHKSDVRRASIMHERG 703 Query 180 FAEFAVVLGFDVKVD 194 F E AV+L FD+KVD Sbjct 704 FPEMAVILAFDIKVD 718 Lambda K H 0.317 0.131 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 44893337425 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40