bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1838_orf1 Length=155 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd5_1770 71.2 9e-12 > 5807.cgd5_1770 Length=185 Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query 50 RLLYRVLRLP-GDGEAGSSRRVLFELEDTFAPQKENS---SKSIRALADMKRKQVALPRH 105 R+ YR +RLP D E G + E+ED P E+S + + +M R+++ +P Sbjct 5 RVYYRTVRLPPEDSEIGDPISLCLEIEDL--PGIESSYINDQFVNRYFNMARRELFIPPG 62 Query 106 VRDFTPFSIWRPPINPQAENDKYRSIAHGRMGFLIVFDVNDPNS 149 +D PF IWRPP P A KY + GRMGF+ V D+ND +S Sbjct 63 TKDIIPFKIWRPPKVPLAAGQKYLPLTQGRMGFIFVCDINDIDS 106 Lambda K H 0.318 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23746592502 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40