bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_1881_orf1 Length=201 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0062 166 3e-40 > 5833.PF11_0062 Length=117 Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 83/114 (72%), Positives = 97/114 (85%), Gaps = 1/114 (0%) Query 9 MVSKKPAKSAKPASG-KGKGKGKKRRAETYSSYIFKVLKQVHPETGISKKSMMIMTSLIG 67 MVSKKPAK+ K +G GK K KK R ++Y YIFKVLKQVHP+TGIS+KSM IM S + Sbjct 1 MVSKKPAKAKKTGTGPDGKKKRKKSRYDSYGLYIFKVLKQVHPDTGISRKSMNIMNSFLV 60 Query 68 DTFDKIASEAGKLCKYNKKDTLSSREIQTAVRLVLPGELAKHAVSEGTKAVTKY 121 DTF+KIA+EA +LCKY ++DTLSSREIQTA+RLVLPGELAKHAVSEGTKAVTK+ Sbjct 61 DTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELAKHAVSEGTKAVTKF 114 Lambda K H 0.313 0.128 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 48387021971 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40