bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2040_orf1 Length=151 Score E Sequences producing significant alignments: (Bits) Value 3702.AT1G07705.2 82.0 5e-15 > 3702.AT1G07705.2 Length=614 Score = 82.0 bits (201), Expect = 5e-15, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 48/88 (54%), Gaps = 0/88 (0%) Query 3 LNSTECLYGAFTSPISETPVTKTVEELLPQCYVAAAPTPFRTSHLEKLETRTLFYIFYTS 62 LNSTE L+ F SP S P E +PQCY A P P KL TLFY+FY+ Sbjct 474 LNSTENLHKTFGSPWSNEPSKVDPEFSVPQCYYAKNPPPLHQGLFAKLLVETLFYVFYSM 533 Query 63 PRLLLQGYAAVELTRRQWTYHKEWRKWF 90 P+ Q YAA EL R W YHKE R WF Sbjct 534 PKDEAQLYAANELYNRGWFYHKEHRLWF 561 Lambda K H 0.315 0.128 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22675567716 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40