bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2055_orf1 Length=129 Score E Sequences producing significant alignments: (Bits) Value 3702.AT5G13780.1 122 2e-27 > 3702.AT5G13780.1 Length=192 Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 56/103 (54%), Positives = 77/103 (74%), Gaps = 3/103 (2%) Query 27 LVRPSDVFDLFEMQHLNFVNLPENYVMKYFFFHSLSWPQLPTVAQDGQGKLVGYVLAKLE 86 +R + V DL MQ N + LPENY MKY+ +H LSWPQL VA+D G++VGYVLAK+E Sbjct 3 CIRRATVDDLLAMQACNLMCLPENYQMKYYLYHILSWPQLLYVAEDYNGRIVGYVLAKME 62 Query 87 DENRQFQKPHGHVTSVAVMRQNRKLGLASKLMRLSQRAMQKVF 129 +E+ + HGH+TS+AV+R +RKLGLA+KLM +Q AM++V+ Sbjct 63 EESNEC---HGHITSLAVLRTHRKLGLATKLMTAAQAAMEQVY 102 Lambda K H 0.329 0.140 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22342951125 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40