bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2256_orf1 Length=430 Score E Sequences producing significant alignments: (Bits) Value 203119.Cthe_3078 81.3 7e-14 > 203119.Cthe_3078 Length=2313 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 75/131 (57%), Positives = 84/131 (64%), Gaps = 34/131 (25%) Query 317 TPPDEPTPTPEPTP--EPTPTPEPTPEPTPE-------PTPEPTP--EPTPTPEPTP--E 363 TP DEPTP+ EPTP EPTP+ EPTP TPE P+ EPTP EPTP+ EPTP E Sbjct 1475 TPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDE 1534 Query 364 PTPTPEPTP---------------EPTPTPEPTPTPEPTP--EPTPTPEPTP--EPTPTP 404 PTP+ EPTP EPTP+ EPTP+ EPTP EPTP+ EPTP EPTP+ Sbjct 1535 PTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSD 1594 Query 405 EPTP--TPEFP 413 EPTP TPE P Sbjct 1595 EPTPSETPEEP 1605 Lambda K H 0.311 0.128 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 176453195035 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40