bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2269_orf1 Length=134 Score E Sequences producing significant alignments: (Bits) Value 3702.AT2G30000.1 198 5e-50 > 3702.AT2G30000.1 Length=110 Score = 198 bits (503), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 95/108 (87%), Positives = 101/108 (93%), Gaps = 0/108 (0%) Query 26 AKHHPDLIMCRKQPGIAIGRLCERCDGKCPICDSYVRPHTLVRICDECNYGSFQGRCVIC 85 AKHHPDLIMCRKQPGIAIGRLCE+CDGKC ICDSYVRP TLVRICDECNYGSFQGRCVIC Sbjct 2 AKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVIC 61 Query 86 GGQGISDAFYCKECCQMEKDRDGCPKIVNLGSAKSDLFYARKQFGAKR 133 GG GISDA+YCKEC Q EKDRDGCPKIVNLGSAK+DLFY RK++G K+ Sbjct 62 GGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 109 Lambda K H 0.327 0.141 0.473 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22682284714 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40