bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2347_orf2 Length=132 Score E Sequences producing significant alignments: (Bits) Value 5833.PF07_0054 229 2e-59 > 5833.PF07_0054 Length=123 Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/123 (88%), Positives = 119/123 (96%), Gaps = 0/123 (0%) Query 10 MSGKGPAQKSQAAKKTAGKSLGPRYRRRKRTESFALYIYKVLKQVHPETGVSKKSMSIMN 69 MSGKGPAQKSQAAKKTAGK+LGPR++R++RTESF+LYI+KVLKQVHPETGV+KKSM+IMN Sbjct 1 MSGKGPAQKSQAAKKTAGKTLGPRHKRKRRTESFSLYIFKVLKQVHPETGVTKKSMNIMN 60 Query 70 SFINDIFDRLADEAVRLIRYNKKRTLSSREIQTAVRLLLPGELSKHAVSEGTKAVSKYTT 129 SFINDIFDRL EA RLIRYNKKRTLSSREIQTAVRLLLPGELSKHAVSEGTKAV+KYTT Sbjct 61 SFINDIFDRLVTEATRLIRYNKKRTLSSREIQTAVRLLLPGELSKHAVSEGTKAVTKYTT 120 Query 130 SGA 132 S A Sbjct 121 SAA 123 Lambda K H 0.314 0.127 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22851147482 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40