bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2504_orf1 Length=167 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF0840w 97.1 2e-19 > 5833.PFF0840w Length=139 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 19/143 (13%) Query 24 TVEIQRRPARQGTVTLKPNSSMQKTRSFADPRSIPQILKQIYVPEEYDEASSVLICNFPG 83 TVE+Q+R T+S P SI + L IY P+++DE S++++CNFP Sbjct 10 TVELQKRKV---------------TQSKNAPSSIERKLGNIYAPKDFDEDSTIVVCNFPQ 54 Query 84 SVSAAACRNFCGWFGAVVRVERTSSVSGEANFVVVFSNPEPAAALKSAGEL-MFTDGKTP 142 + + C+NF W G V++VE+ S E N++VVF NP A K+A E+ +F + KT Sbjct 55 KTTISECKNFMQWIGPVIKVEKIPSFMQENNYLVVFCNPYFA---KAALEIPLFYENKTK 111 Query 143 LFCRAVDTKPSIWTSLTALWGGN 165 LF RAV+ + ++W ++ + N Sbjct 112 LFTRAVEKRETLWQNINDMITTN 134 Lambda K H 0.317 0.130 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 30498925597 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40