bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2700_orf3 Length=127 Score E Sequences producing significant alignments: (Bits) Value 4952.YALI0F20856g 97.4 1e-19 > 4952.YALI0F20856g Length=153 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/109 (49%), Positives = 72/109 (66%), Gaps = 13/109 (11%) Query 31 SGMPVNESCVTTFNELKLRHSFKWIIFKIDH--DEIVVEKKGTGDA-STLTKELPASDCR 87 SG+ VN+S + FNELKL +II+KI+ EIVVE++GT D+ T +LP +DCR Sbjct 14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEGTTDSYDTFLGKLPENDCR 73 Query 88 YAVYD--------EGQR--IHFILWSPDCAPVKPRMIYSSSKDALAKKL 126 YAVYD EG+R + F WSPD APV+ +MIY+SSKD+L + L Sbjct 74 YAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRAL 122 Lambda K H 0.322 0.135 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22506847341 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40