bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2754_orf1 Length=243 Score E Sequences producing significant alignments: (Bits) Value 3702.AT4G12400.2 150 4e-35 > 3702.AT4G12400.2 Length=558 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 115/193 (59%), Gaps = 18/193 (9%) Query 59 AQEEKAKGNAAFQNGDFHAAVQHFTNAIQLSPQDHLLYSNRSGAFASLKDFENALKDAET 118 A+E K+KGNAAF +GD+ A+ HFT AI LSP +H+LYSNRS ++ASL +E AL DA+ Sbjct 2 AEEAKSKGNAAFSSGDYATAITHFTEAINLSPTNHILYSNRSASYASLHRYEEALSDAKK 61 Query 119 CVKLKPDWAKGYSRKGLAEFNLGRLGEAERSYSKGLELEPSNEGLQKGLKEVQQSGASLR 178 ++LKPDW+KGYSR G A L + EA SY KGLE++PSNE L+ GL + +S S + Sbjct 62 TIELKPDWSKGYSRLGAAFIGLSKFDEAVDSYKKGLEIDPSNEMLKSGLADASRSRVSSK 121 Query 179 DM--------HALWAVSTALNRHPKLLKYSQQDPNYSKTLAKLLSQVQANPSSLRLVMAQ 230 +W TA P Y +QD K + ++Q NP++L L M Sbjct 122 SNPFVDAFQGKEMWEKLTA---DPGTRVYLEQD-----DFVKTMKEIQRNPNNLNLYMK- 172 Query 231 PDVRIREGMTVLL 243 D R+ + + VLL Sbjct 173 -DKRVMKALGVLL 184 Lambda K H 0.318 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 71395206278 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40