bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2778_orf1 Length=224 Score E Sequences producing significant alignments: (Bits) Value 3702.AT1G01090.1 304 1e-81 > 3702.AT1G01090.1 Length=428 Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 147/223 (65%), Positives = 172/223 (77%), Gaps = 3/223 (1%) Query 2 GRFVEDACARLYYRGKTAGFVHLYTGQEAVSTGVLKLLRKGDAVASTYRDHVHATSKGVP 61 GR ED CA++YYRGK GFVHLY GQEAVSTG +KLL K D+V STYRDHVHA SKGV Sbjct 94 GRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVS 153 Query 62 AREVFAELFGKTTGCSKGFGGSMHMFSKEWNLYGGFAFIGEQIPIALGVAFSQLYRRLAR 121 AR V +ELFGK TGC +G GGSMHMFSKE N+ GGFAFIGE IP+A G AFS YRR Sbjct 154 ARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVL 213 Query 122 RELPGEKDQVTVCFMGDGTTNMGQFYEAMNMAALMKLPVIFVVENNNWAIGMAAQRSTAV 181 ++ + D VTV F GDGT N GQF+E +NMAAL KLP+IFVVENN WAIGM+ R+T+ Sbjct 214 KQ---DCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSD 270 Query 182 QEIHQRGPPFGVPSVEVDGMDVLAVRAAARQAIERARKGEGPS 224 EI ++GP FG+P V VDGMDVL VR A++A+ RAR+GEGP+ Sbjct 271 PEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPT 313 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 61611077973 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40