bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2868_orf6 Length=409 Score E Sequences producing significant alignments: (Bits) Value 6239.B0511.4 73.2 1e-11 > 6239.B0511.4 Length=367 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 16/155 (10%) Query 229 DAKIYIAQRLLLQVLHLQEIGACHNDLKLSSCFMRADGSFLLGD--FASINVAGTEAGKF 286 DAK Q L+ + HLQ H DLK + FM G+ LGD F+ I G ++G F Sbjct 170 DAKFTFRQ-LIAALTHLQSYNIVHRDLKCENIFMDKHGNVKLGDFGFSRILKPGEKSGTF 228 Query 287 VGATLAFTEPELFMNIRKGIETATPVVPEARSDLWSLGALLYELFTGDLPYGLSAPAHSM 346 G+ A+ PE+F +G E + V D+WS G +LY + G +P+ P + Sbjct 229 CGSR-AYVAPEIF----RGREYSGNAV-----DVWSTGVILYIMLAGSMPFDDRDPRKMI 278 Query 347 DRLYIH---FTELLQRDISSAVLVPEMAKSHVPER 378 +R H F + + S LV E+ + H P R Sbjct 279 ERQLAHKIKFPKSCTSSVFSKALVLEILQPHAPNR 313 Lambda K H 0.316 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 164060161270 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40