bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2936_orf2 Length=85 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI1695c 90.1 2e-17 > 5833.PFI1695c Length=193 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 40/84 (47%), Positives = 58/84 (69%), Gaps = 4/84 (4%) Query 4 SKGALEARA----SLFVENLAEGTSKGALEILFSQYKGFREVRLVEGRGVAFVDFAAPAA 59 SK +E ++ +L V+NL + +K ALEILF+QY GF EVR + G+ +AFVDF A Sbjct 109 SKHNIEHKSNLIYTLLVQNLPDEINKNALEILFNQYPGFYEVRYIPGKNIAFVDFTAQEH 168 Query 60 AEVALSGLQGFKISSSHQLRISHV 83 AE++++GLQ FKI+ H ++IS V Sbjct 169 AEISMTGLQNFKITPHHPMKISWV 192 Lambda K H 0.317 0.133 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22515314785 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40