bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_2992_orf1 Length=225 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd5_1030 63.5 5e-09 > 5807.cgd5_1030 Length=400 Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 13/164 (7%) Query 21 TRKAVGLRRASDSEDDTRKNKMANAQQSLFDDELGLERQKKKRLKSFLKDKNNSKGKTNE 80 T K +G+ +S E++ M ++D + GL+RQ+KKR S + +K NS + Sbjct 130 TNKNLGIFNSS-CENNVIPGVMRGILDDIYDKDFGLKRQEKKRKISAMLNKENSDD--SR 186 Query 81 YIDSALSLGNLRQEAVTWDFE-EGERSDDEGGEAPQDAKENAAETLEADPVE------SE 133 + SALSL L+ WD++ +G+ SDDEG + E E + V SE Sbjct 187 IVVSALSLTTLKS-GDYWDYDGDGKMSDDEGYIEKNEMDEKFEEEHNPNLVNGNDYSNSE 245 Query 134 TDDDPEDPLTSFGQKMKNLLEKARDEEADAELHQY--ESDDDEE 175 D+ P+ LT +GQ +K ++ +D EAD EL+ Y E DDD E Sbjct 246 DDEGPDGILTEYGQTLKTMIANQQDMEADEELNLYSDEIDDDVE 289 Lambda K H 0.302 0.124 0.336 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 61360267097 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40