bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eten_3375_orf6 Length=368 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0573 73.2 1e-11 > 5833.PF14_0573 Length=295 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 20/147 (13%) Query 20 PSLNVTELSFFSLDSTQKWAERHLDELVCAHLLPHLQQQKQQQKQQQKQALATGGHCLCV 79 P N + F LDSTQ +++R+ +K K + + + Sbjct 14 PEYNCMRIHFDVLDSTQLFSKRN-------------------KKFFIKSGKLKENNTIII 54 Query 80 TAAKQTAGVGTRRGDTGEERRWVSAAGNLHATYLLPWKQNQQQLLLHLPFVAALSVQRVL 139 + QT G+GTR +R W+S GNL +++ W +NQ + L +++ + + Sbjct 55 SCNIQTNGIGTRDTKRNMDRYWLSDKGNLFISFIFLWNKNQMNKINCLAQTCTVAISKTI 114 Query 140 QHLGVKGSKIKWVNDVLVNNKKIAGVL 166 ++ ++ ++IKW+NDVL++ KKIAG L Sbjct 115 EYYNLR-TQIKWINDVLIDYKKIAGCL 140 Lambda K H 0.316 0.129 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 142231533063 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40